Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.3e-120 433.7 245 100.0
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.1e-117 426.8 247 98.8
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.2e-52 209.9 277 54.9
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 3.0e-46 189.5 250 47.6
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 6.8e-46 188.3 247 47.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 3.4e-45 186.0 243 49.8
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.9e-44 182.2 258 47.7
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.4e-43 179.9 242 52.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 1.3e-41 174.1 248 50.4
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 5.2e-38 162.2 250 46.0
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 2.2e-36 156.8 251 44.2
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.0e-34 150.2 252 49.6
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 6.2e-31 138.7 104 70.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.1e-30 137.9 110 67.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.2e-29 134.4 109 63.3
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.2e-29 134.4 111 69.4
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.6e-29 133.3 109 67.9
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.4e-29 132.9 111 68.5
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.8e-29 132.1 244 40.2
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.8e-29 132.1 111 68.5
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 9.9e-29 131.3 111 67.6
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.7e-28 130.6 105 67.6
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.7e-28 130.6 105 67.6
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-28 130.6 109 63.3
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.7e-28 130.6 104 65.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.2e-28 130.2 103 67.0
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.2e-28 130.2 104 66.3
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 2.9e-28 129.8 112 64.3
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.9e-28 129.8 111 61.3
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.9e-28 129.8 103 67.0
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 3.7e-28 129.4 104 62.5
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.9e-28 129.0 104 67.3
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 6.4e-28 128.6 103 67.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 6.4e-28 128.6 99 68.7
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 6.4e-28 128.6 103 67.0
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 6.4e-28 128.6 103 67.0
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 6.4e-28 128.6 110 65.5
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 6.4e-28 128.6 100 67.0
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 6.4e-28 128.6 111 60.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 8.3e-28 128.3 100 68.0
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.1e-27 127.9 111 66.7
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.4e-27 127.5 103 66.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.4e-27 127.5 104 64.4
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.4e-27 127.5 110 61.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-27 127.1 103 66.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.9e-27 127.1 121 60.3
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.4e-27 126.7 111 67.6
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.4e-27 126.7 107 61.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.4e-27 126.7 104 63.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 3.2e-27 126.3 104 64.4
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 7.1e-27 125.2 104 63.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 7.1e-27 125.2 110 63.6
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 9.2e-27 124.8 104 64.4
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.2e-26 124.4 134 56.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-26 124.0 104 64.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.1e-26 123.6 108 61.1
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 2.7e-26 123.2 113 61.9
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.5e-26 122.9 104 63.5
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.5e-26 122.9 108 62.0
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.6e-26 122.5 108 60.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 4.6e-26 122.5 111 59.5
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.6e-26 122.5 104 64.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.6e-26 122.5 103 62.1
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.0e-26 122.1 104 58.7
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.0e-26 122.1 273 34.8
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.0e-25 121.3 108 58.3
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.0e-25 121.3 102 63.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-25 121.3 263 34.6
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.3e-25 120.9 103 61.2
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.3e-25 120.9 104 63.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.7e-25 120.6 105 62.9
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.7e-25 120.6 104 57.7
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.7e-25 120.6 104 65.4
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.7e-25 120.6 104 64.4
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.7e-25 120.6 104 62.5
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.0e-25 119.8 104 61.5
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.9e-25 119.4 104 63.5
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.9e-25 119.4 103 63.1
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 5.1e-25 119.0 113 60.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.6e-25 118.6 103 59.2
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-24 117.9 103 58.3
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.1e-24 117.9 110 60.0
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.5e-24 117.5 109 60.6
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.9e-24 117.1 111 55.9
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-24 117.1 100 59.0
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.9e-24 117.1 109 58.7
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.5e-24 116.7 269 33.8
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.5e-24 116.7 100 59.0
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.5e-24 116.7 96 62.5
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.5e-24 116.7 104 57.7
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.3e-24 116.3 99 60.6
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.3e-24 115.9 109 59.6
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 4.3e-24 115.9 96 62.5
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.2e-23 114.4 102 56.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 1.6e-23 114.0 98 57.1
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.1e-23 113.6 104 54.8
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.1e-23 113.6 277 32.5
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 4.7e-23 112.5 112 53.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.7e-23 112.5 101 57.4
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 6.2e-23 112.1 141 48.9
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 1.1e-22 111.3 109 54.1
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.4e-22 110.2 103 56.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 5.2e-22 109.0 111 52.3
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 5.2e-22 109.0 97 61.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.8e-22 108.6 112 50.9
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 6.8e-22 108.6 112 50.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.9e-22 108.2 98 58.2
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 8.9e-22 108.2 116 50.0
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-21 107.8 98 59.2
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-21 107.8 112 49.1
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.5e-21 107.5 112 49.1
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.5e-21 107.5 112 49.1
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.5e-21 107.5 112 50.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.0e-21 107.1 112 50.0
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.0e-21 107.1 98 58.2
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.6e-21 106.7 100 56.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 2.6e-21 106.7 105 56.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 3.4e-21 106.3 131 46.6
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 3.4e-21 106.3 131 46.6
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.4e-21 106.3 100 56.0
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 4.4e-21 105.9 131 46.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 9.9e-21 104.8 103 53.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.3e-20 104.4 105 46.7
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-20 104.4 113 48.7
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 4.9e-20 102.4 106 52.8
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 6.4e-20 102.1 108 51.9
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 6.4e-20 102.1 114 45.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 8.4e-20 101.7 98 56.1
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.4e-20 101.7 112 49.1
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.1e-19 101.3 89 59.6
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.1e-19 101.3 105 53.3
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.1e-19 101.3 105 53.3
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-19 100.1 258 32.2
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.2e-19 99.8 103 51.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.2e-19 99.8 103 51.5
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 7.1e-19 98.6 264 32.2
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.6e-18 97.4 156 42.3
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.1e-18 97.1 103 51.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.5e-18 96.3 116 51.7
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 4.6e-18 95.9 116 50.0
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 4.6e-18 95.9 116 50.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.0e-17 94.7 99 49.5
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-17 94.0 120 50.0
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 2.3e-17 93.6 103 50.5
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-17 93.6 120 50.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 2.3e-17 93.6 103 50.5
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-17 93.6 120 50.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 2.3e-17 93.6 103 50.5
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.0e-17 93.2 89 55.1
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 5.1e-17 92.4 77 63.6
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 6.6e-17 92.0 98 46.9
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.5e-16 90.9 99 50.5
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.5e-16 90.1 63 71.4
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.8e-15 86.7 106 42.5
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 2.8e-15 86.7 97 44.3
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 8.1e-15 85.1 63 66.7
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.1e-14 83.2 96 46.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.0e-14 81.6 68 61.8
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.0e-14 81.6 68 61.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.0e-13 80.5 70 60.0
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 5.8e-13 79.0 98 40.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.7e-12 77.4 70 57.1
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 4.2e-11 72.8 76 52.6
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.2e-10 71.2 87 44.8
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 1.0e-09 68.2 112 40.2
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.5e-08 64.3 72 45.8
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.6e-07 60.8 100 44.0
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 5.3e-06 55.8 106 38.7


User provided reference genes

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