Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 6.0e-135 484.2 247 100.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 5.1e-134 481.1 247 99.6
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 2.8e-132 475.3 247 98.8
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.0e-117 426.0 247 87.9
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 2.2e-116 422.5 247 87.4
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 3.4e-114 415.2 246 87.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.9e-113 412.1 247 86.2
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.4e-112 409.8 248 86.3
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 3.2e-112 408.7 249 85.5
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 5.5e-112 407.9 248 84.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.4e-110 403.3 250 82.0
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.4e-110 403.3 250 82.8
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.4e-110 403.3 257 81.7
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.8e-110 402.9 249 83.5
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.1e-109 400.2 250 82.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 7.4e-109 397.5 246 83.3
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.7e-108 396.4 250 81.2
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.2e-108 396.0 250 81.6
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 3.7e-108 395.2 244 82.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.7e-108 395.2 244 82.8
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.1e-107 393.7 252 80.6
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-107 393.7 245 83.3
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 2.4e-107 392.5 248 82.3
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 3.1e-107 392.1 250 80.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.1e-107 392.1 244 82.0
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.1e-107 391.7 248 81.5
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 7.0e-107 391.0 247 82.2
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 7.0e-107 391.0 247 81.4
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 9.1e-107 390.6 250 81.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 1.2e-106 390.2 247 81.0
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.5e-106 389.8 248 80.6
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.0e-106 389.4 247 80.2
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 2.0e-106 389.4 247 81.8
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.0e-106 389.4 246 81.7
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.0e-106 389.4 246 82.1
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 2.0e-106 389.4 253 80.2
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 2.6e-106 389.0 246 81.3
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 4.5e-106 388.3 250 80.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 5.9e-106 387.9 246 82.9
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 5.9e-106 387.9 247 82.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 7.7e-106 387.5 248 81.9
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-105 386.7 258 77.9
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.7e-105 386.3 257 79.8
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.7e-105 386.3 246 81.3
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.2e-105 386.0 246 79.7
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.9e-105 385.6 246 81.3
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.9e-105 385.6 246 81.3
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 8.5e-105 384.0 251 79.7
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 1.9e-104 382.9 247 81.0
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.5e-104 382.5 251 79.3
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 5.5e-104 381.3 248 79.4
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.2e-104 380.9 249 79.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 9.4e-104 380.6 249 78.7
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 9.4e-104 380.6 251 78.9
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.6e-103 378.6 251 78.1
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.7e-103 378.3 247 80.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 1.0e-102 377.1 242 81.0
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 5.2e-102 374.8 243 79.4
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 6.7e-102 374.4 247 79.8
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 4.4e-101 371.7 247 79.8
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.7e-101 371.3 245 80.0
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 7.4e-101 370.9 250 77.2
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 7.4e-101 370.9 246 79.7
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 9.7e-101 370.5 242 80.2
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.7e-100 369.8 247 78.5
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.7e-100 368.6 246 78.0
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 4.8e-100 368.2 246 77.6
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 4.8e-100 368.2 246 77.6
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 4.8e-100 368.2 246 77.6
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.2e-100 367.5 246 77.6
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 1.1e-99 367.1 246 77.6
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.1e-99 367.1 242 79.3
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.1e-99 367.1 246 79.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 1.8e-99 366.3 246 77.2
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.4e-99 365.9 246 78.5
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.4e-99 365.9 246 77.2
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.1e-99 365.2 247 77.3
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.3e-99 364.8 303 67.0
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.0e-99 364.4 249 77.1
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 1.2e-98 363.6 245 76.7
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.6e-98 363.2 248 76.6
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.6e-98 363.2 243 77.4
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 2.6e-98 362.5 251 75.7
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 2.6e-98 362.5 245 77.1
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 3.5e-98 362.1 246 76.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.5e-98 362.1 246 77.2
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.5e-98 361.7 246 77.6
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 5.9e-98 361.3 246 78.0
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 7.7e-98 360.9 242 77.7
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 1.0e-97 360.5 247 75.7
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.2e-97 359.4 265 72.8
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.9e-97 359.0 244 77.0
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.9e-97 359.0 265 72.1
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.9e-97 359.0 247 76.1
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 3.8e-97 358.6 242 77.7
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 3.8e-97 358.6 219 84.0
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.8e-97 358.6 247 76.5
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 8.5e-97 357.5 248 76.2
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-96 357.1 247 75.7
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-96 356.7 226 82.7
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.6e-95 353.2 249 75.1
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-95 352.8 247 74.5
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.1e-95 351.3 247 74.5
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 8.0e-95 350.9 247 74.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 1.0e-94 350.5 247 74.1
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.4e-94 350.1 247 75.7
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.8e-94 349.7 249 74.3
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 2.3e-94 349.4 246 76.0
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 9.8e-93 344.0 245 73.5
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.4e-91 340.1 251 73.3
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.4e-91 340.1 239 75.7
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.8e-91 339.7 246 70.7
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.4e-91 338.2 248 73.4
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 1.9e-88 329.7 265 68.7
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.9e-88 329.7 202 84.2
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.5e-88 329.3 194 86.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 4.7e-87 325.1 248 70.2
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.8e-86 320.9 244 70.1
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 9.8e-85 317.4 231 74.0
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 4.9e-84 315.1 224 77.2
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 6.3e-84 314.7 230 72.2
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 7.0e-83 311.2 246 69.1
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 5.5e-80 301.6 246 67.1
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.2e-77 293.9 179 83.8
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 9.8e-77 290.8 182 80.2
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 9.8e-77 290.8 217 74.2
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-76 290.4 246 65.0
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 2.9e-76 289.3 243 64.2
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.3e-73 279.6 161 87.6
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 6.6e-73 278.1 210 65.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 2.5e-72 276.2 247 59.5
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 2.5e-72 276.2 226 60.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 1.8e-70 270.0 221 62.0
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.3e-70 269.6 236 61.0
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 2.3e-70 269.6 214 66.4
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.3e-68 261.2 181 74.0
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.2e-66 257.3 228 61.0
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.2e-63 247.3 178 68.0
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.9e-60 235.3 202 63.9
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-59 234.2 257 55.6
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.6e-55 220.3 166 69.3
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.8e-54 216.9 130 83.8
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 2.6e-53 213.0 142 77.5
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 6.6e-49 198.4 214 47.2
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.7e-47 192.2 154 66.9
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 3.4e-45 186.0 154 66.9
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.5e-40 169.9 121 77.7
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-39 166.8 108 77.8
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 3.3e-32 142.9 96 74.0
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 5.6e-32 142.1 80 83.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 4.8e-31 139.0 82 85.4
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 5.5e-27 125.6 64 93.8
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.5e-16 90.9 56 82.1
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.9e-16 90.5 66 75.8
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 5.3e-14 82.4 112 47.3
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 8.4e-12 75.1 60 63.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 4.6e-10 69.3 49 69.4
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.1e-09 65.9 63 58.7


User provided reference genes

Program Settings