Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MYM2HE Arachis hypogaea HOM05D001750 ORTHO05D012795 2.5e-178 628.6 308 100.0
Glyma.15G187800 Glycine max HOM05D001750 ORTHO05D001825 8.4e-86 321.2 252 67.9
Glyma.15G187600 Glycine max HOM05D001750 ORTHO05D001825 2.5e-85 319.7 252 67.5
LjContig00315g0010666 Lotus japonicus HOM05D001750 ORTHO05D001825 1.0e-67 261.2 252 57.9
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 1.2e-60 237.7 150 78.0
Nitab4.5_0000085g0160 Nicotiana tabacum HOM05D001750 ORTHO05D001825 9.7e-58 228.0 247 53.8
VMungo0329G0005 Vigna mungo HOM05D011107 ORTHO05D012795 3.8e-46 189.5 164 63.4
Nitab4.5_0001788g0310 Nicotiana tabacum HOM05D011107 ORTHO05D012795 8.5e-46 188.3 189 57.1
arahy.Tifrunner.gnm1.ann1.97K591 Arachis hypogaea HOM05D011107 ORTHO05D012795 2.6e-42 176.8 151 62.9
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.2e-41 173.7 176 56.8
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.2e-41 173.7 176 56.8
Hma1.2p1_0859F.1_g229495 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 9.8e-34 148.3 123 61.8
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 2.0e-31 140.6 72 97.2
arahy.Tifrunner.gnm1.ann1.B33B9N Arachis hypogaea HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 97.2
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Lj2A1235G104 Lonicera japonica HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 4.5e-31 139.4 72 95.8
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 5.9e-31 139.0 71 97.2
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 5.9e-31 139.0 99 71.7
Migut.F01235 Erythranthe guttata HOM05D001750 ORTHO05D001825 1.3e-30 137.9 72 94.4
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 1.3e-30 137.9 72 94.4
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 1.3e-30 137.9 72 94.4
Atru.chr9.151 Acer truncatum HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
CDE02G3422 Ceratophyllum demersum HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 2.3e-30 137.1 72 94.4
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-30 136.7 72 94.4
Lalb_Chr02g0153721 Lupinus albus HOM05D001750 ORTHO05D001825 2.9e-30 136.7 72 94.4
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 3.9e-30 136.3 72 91.7
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 5.0e-30 136.0 72 94.4
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 6.6e-30 135.6 72 93.1
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 6.6e-30 135.6 72 93.1
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 6.6e-30 135.6 72 93.1
FAN14G0206 Fragaria x ananassa HOM05D001750 ORTHO05D001825 6.6e-30 135.6 72 93.1
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 6.6e-30 135.6 71 94.4
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 6.6e-30 135.6 71 94.4
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 1.1e-29 134.8 72 93.1
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 1.1e-29 134.8 72 93.1
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 1.1e-29 134.8 72 93.1
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.1e-29 134.8 72 91.7
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.1e-29 134.8 72 91.7
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.1e-29 134.8 72 91.7
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.5e-29 134.4 71 94.4
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 1.5e-29 134.4 72 93.1
SGA_v2.0_scaffold245G44454 Striga asiatica HOM05D011107 ORTHO05D012795 1.5e-29 134.4 83 78.3
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 1.5e-29 134.4 72 93.1
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 1.5e-29 134.4 72 93.1
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 1.9e-29 134.0 72 93.1
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 1.9e-29 134.0 72 93.1
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 1.9e-29 134.0 72 93.1
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 4.3e-29 132.9 72 91.7
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 5.6e-29 132.5 71 93.0
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 5.6e-29 132.5 71 93.0
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 4.7e-28 129.4 71 91.5
SHI35585 Sapria himalayana HOM05D001750 ORTHO05D001825 4.7e-28 129.4 71 85.9
Ah.02g118860 Amaranthus hybridus HOM05D001750 ORTHO05D001825 2.3e-27 127.1 72 88.9
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 4.0e-27 126.3 72 87.5
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 2.6e-26 123.6 64 95.3
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 5.8e-26 122.5 96 64.6
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 5.8e-26 122.5 66 92.4
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 5.8e-26 122.5 66 92.4
Migut.J01211 Erythranthe guttata HOM05D001750 ORTHO05D001825 1.3e-25 121.3 72 84.7
Phvul.005G088418 Phaseolus vulgaris HOM05D011107 ORTHO05D012795 2.2e-25 120.6 63 90.5
SHI09895 Sapria himalayana HOM05D001750 ORTHO05D001825 5.4e-24 115.9 71 80.3
Nitab4.5_0000172g0100 Nicotiana tabacum HOM05D001750 ORTHO05D001825 9.2e-24 115.2 153 45.8
Solyc10g062020.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-23 114.4 72 79.2
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 3.5e-23 113.2 61 91.8
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 3.5e-23 113.2 61 91.8
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 3.5e-23 113.2 61 91.8
SalBow1G4588 Salvia bowleyana HOM05D011107 ORTHO05D012795 4.6e-23 112.8 63 85.7
Nitab4.5_0001152g0320 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.0e-22 111.7 94 67.0
Migut.O00324 Erythranthe guttata HOM05D001750 ORTHO05D001825 3.1e-19 100.1 57 86.0
Nitab4.5_0000172g1840 Nicotiana tabacum HOM05D001750 ORTHO05D012795 4.0e-19 99.8 63 76.2
Peaxi162Scf00079g00616 Petunia axillaris HOM05D011107 ORTHO05D012795 8.9e-19 98.6 92 59.8
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 2.6e-18 97.1 60 76.7
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 2.6e-18 97.1 60 76.7
Psat7g150640 Pisum sativum HOM05D001750 ORTHO05D001825 1.7e-17 94.4 45 91.1
FAN14G3152 Fragaria x ananassa HOM05D011107 ORTHO05D012795 8.6e-14 82.0 46 87.0
C04p50440 Brassica napus HOM05D067297 ORTHO05D012795 1.5e-13 81.3 60 71.7
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 1.9e-13 80.9 53 69.8
arahy.Tifrunner.gnm1.ann1.N4DGME Arachis hypogaea HOM05D001750 ORTHO05D001825 5.6e-13 79.3 48 70.8
arahy.Tifrunner.gnm1.ann1.JP5E1S Arachis hypogaea HOM05D037227 ORTHO05D031574 7.3e-13 79.0 40 95.0
BolC4t26642H Brassica oleracea HOM05D067297 ORTHO05D012795 7.3e-13 79.0 60 70.0
Nitab4.5_0001788g0240 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.3e-13 79.0 43 90.7
CAN.G1159.8 Capsicum annuum HOM05D001750 ORTHO05D001825 8.9e-11 72.0 36 88.9
Potri.015G051300 Populus trichocarpa HOM05D001750 ORTHO05D001825 3.4e-10 70.1 43 83.7
CSS0000875 Camellia sinensis var. sinensis HOM05D001750 ORTHO05D001825 5.8e-10 69.3 36 94.4
CARHR282870 Cardamine hirsuta HOM05D011107 ORTHO05D012795 5.8e-10 69.3 53 66.0
AL2G35420 Arabidopsis lyrata HOM05D011107 ORTHO05D012795 1.3e-09 68.2 46 73.9
Nitab4.5_0000172g2270 Nicotiana tabacum HOM05D001750 ORTHO05D012795 5.4e-08 62.8 39 79.5
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 7.1e-08 62.4 106 35.8
SHI16092 Sapria himalayana HOM05D001750 ORTHO05D001825 9.2e-08 62.0 58 55.2
Nn003s41386 Nelumbo nucifera HOM05D037227 ORTHO05D031574 8.6e-06 55.5 30 80.0
Nn1g10011 Nelumbo nucifera HOM05D037227 ORTHO05D031574 8.6e-06 55.5 30 80.0


User provided reference genes

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