Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 0.0e+00 2120.5 1093 100.0
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 0.0e+00 1907.9 1041 94.9
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 1.6e-187 661.0 1129 43.0
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 6.7e-186 655.6 1147 42.2
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 1.9e-180 637.5 1284 39.4
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.4e-167 594.7 1135 41.7
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 1.3e-157 561.6 1193 39.1
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.7e-141 508.1 1208 35.1
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 6.1e-139 499.6 1242 35.5
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 8.0e-139 499.2 1148 36.5
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 6.4e-136 489.6 1202 33.4
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 1.2e-134 485.3 1206 34.7
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.5e-121 441.8 1196 33.4
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 2.2e-120 438.0 1190 33.1
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 1.2e-115 422.2 1167 32.4
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 3.3e-108 397.5 1243 30.9
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 7.3e-108 396.4 1281 30.8
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.3e-104 385.6 1126 31.9
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 3.9e-101 374.0 1137 31.1
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 1.5e-100 372.1 1175 30.4
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 6.2e-99 366.7 1113 30.8
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 8.1e-99 366.3 1097 31.2
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 2.6e-97 361.3 1144 30.2
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 2.2e-96 358.2 1103 30.4
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 3.8e-96 357.5 1174 30.2
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 2.7e-94 351.3 1109 31.0
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 6.0e-94 350.1 1118 30.9
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 7.9e-94 349.7 1182 29.5
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 1.3e-93 349.0 1215 29.2
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.3e-93 349.0 1123 30.1
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 5.1e-93 347.1 1087 31.0
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 1.5e-92 345.5 1126 30.6
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 7.4e-92 343.2 1235 29.1
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 9.6e-92 342.8 1207 29.0
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 6.2e-91 340.1 1122 28.6
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 1.4e-90 339.0 1114 29.0
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 1.4e-90 339.0 1110 30.0
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.8e-90 338.6 1168 29.8
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 1.5e-89 335.5 614 40.1
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 2.0e-89 335.1 1102 29.9
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 2.2e-88 331.6 689 36.0
arahy.Tifrunner.gnm1.ann1.F3UX6K Arachis hypogaea HOM05D021551 ORTHO05D004897 3.2e-87 327.8 177 93.8
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 6.0e-86 323.6 1151 28.9
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 5.1e-85 320.5 1108 29.1
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 1.9e-84 318.5 1090 29.7
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 9.6e-84 316.2 1087 29.3
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 4.8e-83 313.9 1132 30.2
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 1.1e-82 312.8 1098 29.3
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 3.1e-82 311.2 1088 29.4
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 1.5e-81 308.9 1114 27.9
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 4.5e-81 307.4 1071 29.6
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.0e-80 306.2 1184 28.9
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 2.2e-80 305.1 633 37.3
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 1.4e-79 302.4 1186 29.5
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 4.2e-79 300.8 1128 28.1
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 7.1e-79 300.1 1169 29.8
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 1.6e-78 298.9 1124 29.1
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.8e-77 295.4 1164 28.1
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 8.2e-75 286.6 1077 27.7
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 1.1e-74 286.2 1212 26.5
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.1e-74 284.6 552 38.0
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 6.9e-74 283.5 1213 26.3
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 4.5e-73 280.8 1144 27.4
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 2.5e-71 275.0 1098 28.6
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 7.2e-71 273.5 1238 25.8
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 3.6e-70 271.2 1196 27.8
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 1.0e-69 269.6 1077 28.8
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 8.8e-69 266.5 478 39.3
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 1.5e-68 265.8 1259 25.3
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 5.7e-68 263.8 1168 26.5
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 7.4e-68 263.5 1297 25.5
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 7.4e-68 263.5 1174 25.9
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 2.8e-67 261.5 1299 26.2
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 4.8e-67 260.8 681 34.2
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 2.6e-65 255.0 1266 25.6
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 5.0e-64 250.8 412 43.2
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 9.4e-63 246.5 444 39.6
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 9.4e-63 246.5 1154 26.9
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 2.7e-62 245.0 270 56.7
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 2.7e-62 245.0 375 42.7
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 3.6e-62 244.6 1352 25.5
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 4.7e-62 244.2 1120 27.1
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 7.9e-62 243.4 1096 27.6
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 1.8e-61 242.3 1124 26.0
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-61 241.9 1373 25.2
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.0e-61 241.5 379 43.8
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 3.9e-61 241.1 1373 25.1
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 5.1e-61 240.7 1126 26.3
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 6.7e-61 240.4 538 35.5
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 2.0e-60 238.8 477 36.5
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.6e-60 238.4 376 42.3
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 2.6e-60 238.4 524 36.8
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 3.3e-60 238.0 325 45.5
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.3e-60 238.0 380 41.6
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 4.4e-60 237.7 1357 25.7
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 4.4e-60 237.7 515 37.1
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.2e-59 235.3 284 48.2
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 6.3e-59 233.8 411 39.9
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 6.3e-59 233.8 409 38.9
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.1e-58 233.0 408 40.0
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 1.2e-57 229.6 1086 25.9
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 1.5e-57 229.2 686 32.1
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 4.2e-55 221.1 452 36.5
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 9.4e-55 219.9 457 35.7
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 3.6e-54 218.0 485 33.2
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 3.6e-54 218.0 1123 25.6
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 6.7e-53 213.8 399 38.1
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 3.3e-52 211.5 752 28.9
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 8.2e-51 206.8 280 46.8
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 1.6e-49 202.6 321 39.3
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 2.6e-49 201.8 1084 25.5
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 2.9e-48 198.4 210 54.3
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 3.8e-48 198.0 1117 24.8
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 1.5e-47 196.1 1133 24.5
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 1.9e-47 195.7 479 34.7
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 5.5e-47 194.1 263 43.7
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-46 193.0 267 42.7
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 2.1e-46 192.2 270 44.1
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.5e-44 186.0 324 38.6
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 4.4e-44 184.5 283 40.6
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 2.8e-43 181.8 263 41.8
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 3.7e-43 181.4 283 40.3
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.8e-42 179.1 439 32.1
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 3.5e-41 174.9 220 45.0
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 3.5e-41 174.9 220 45.0
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 1.0e-40 173.3 213 43.7
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 1.3e-40 172.9 213 44.6
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 5.0e-40 171.0 300 37.7
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 6.5e-40 170.6 310 37.1
arahy.Tifrunner.gnm1.ann1.9CDI8S Arachis hypogaea HOM05D004393 ORTHO05D004897 3.2e-39 168.3 85 97.6
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 3.2e-39 168.3 271 40.2
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 7.2e-39 167.2 310 39.7
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 9.4e-39 166.8 269 39.4
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.9e-32 145.2 150 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 2.1e-30 139.0 193 39.9
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 3.6e-30 138.3 184 40.2
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.8e-29 136.0 274 36.9
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 4.0e-29 134.8 194 39.2
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 5.7e-28 131.0 189 41.3
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.7e-27 129.4 189 39.2
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 3.9e-24 118.2 186 34.9
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 5.0e-24 117.9 112 48.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.5e-23 116.3 212 34.9
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 2.1e-22 112.5 220 36.4
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 5.2e-21 107.8 145 41.4
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 3.2e-18 98.6 99 48.5
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 2.7e-17 95.5 703 23.9
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 8.6e-16 90.5 128 42.2
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.4e-13 83.2 75 54.7
Lalb_Chr24g0401081 Lupinus albus HOM05D004393 ORTHO05D004897 3.4e-12 78.6 103 42.7
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 2.1e-09 69.3 52 57.7
PGR044G2736 Punica granatum HOM05D000582 ORTHO05D000456 6.0e-09 67.8 139 31.7
Glyma.20G176632 Glycine max HOM05D004393 ORTHO05D004897 7.8e-09 67.4 414 26.3
Peaxi162Scf00207g01618 Petunia axillaris HOM05D004393 ORTHO05D004897 1.5e-07 63.2 98 33.7
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.9e-07 62.8 146 37.0
SEGI_25836 Sequoiadendron giganteum HOM05D001370 ORTHO05D004632 9.5e-07 60.5 86 37.2
QL02p064873 Quercus lobata HOM05D005170 ORTHO05D006985 2.1e-06 59.3 81 40.7
Migut.H00575 Erythranthe guttata HOM05D005170 ORTHO05D006985 2.8e-06 58.9 81 39.5
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 2.8e-06 58.9 74 39.2
Thecc.04G110100 Theobroma cacao HOM05D005170 ORTHO05D006985 2.8e-06 58.9 81 40.7
ECA246G1099 Erigeron canadensis HOM05D005170 ORTHO05D006985 3.6e-06 58.5 74 41.9
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 3.6e-06 58.5 90 41.1
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 4.7e-06 58.2 74 40.5
CBR_g3643 Chara braunii HOM05D006552 ORTHO05D008023 6.2e-06 57.8 83 38.6
Hund16252 Selenicereus undatus HOM05D005170 ORTHO05D006985 8.1e-06 57.4 74 40.5


User provided reference genes

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