Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MSS51R Arachis hypogaea HOM05D008547 ORTHO05D010515 1.7e-221 772.3 372 100.0
arahy.Tifrunner.gnm1.ann1.72JBMR Arachis hypogaea HOM05D008547 ORTHO05D010515 7.3e-217 756.9 372 97.3
Lj2g0004475 Lotus japonicus HOM05D008547 ORTHO05D010515 3.3e-137 492.3 372 64.8
Medtr8g027525 Medicago truncatula HOM05D008547 ORTHO05D010515 2.4e-55 220.3 371 37.2
Medtr1g102770 Medicago truncatula HOM05D008547 ORTHO05D010515 6.7e-53 212.2 364 36.5
TPR.G16819 Trifolium pratense HOM05D008547 ORTHO05D010515 7.6e-49 198.7 369 34.4
Medtr5g009560 Medicago truncatula HOM05D008547 ORTHO05D010515 1.0e-48 198.4 362 35.6
Medtr8g027595 Medicago truncatula HOM05D008547 ORTHO05D010515 8.4e-48 195.3 386 34.7
TPR.G26111 Trifolium pratense HOM05D008547 ORTHO05D010515 1.1e-44 184.9 373 34.0
TPR.G16823 Trifolium pratense HOM05D008547 ORTHO05D010515 1.9e-44 184.1 398 32.4
Medtr5g090860 Medicago truncatula HOM05D008547 ORTHO05D010515 2.5e-44 183.7 393 31.3
Psat4g161600 Pisum sativum HOM05D008547 ORTHO05D010515 7.4e-44 182.2 400 32.5
Ca_23530_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 9.7e-44 181.8 370 31.9
CSS0006076 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.4e-42 177.9 367 33.2
CSS0029898 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 5.3e-42 176.0 367 32.7
Psat4g161480 Pisum sativum HOM05D008547 ORTHO05D010515 5.3e-42 176.0 374 31.6
TPR.G39730 Trifolium pratense HOM05D008547 ORTHO05D010515 5.3e-42 176.0 396 33.6
TPR.G12161 Trifolium pratense HOM05D008547 ORTHO05D010515 1.1e-39 168.3 379 33.0
Dinv12850 Davidia involucrata HOM05D006664 ORTHO05D009007 1.2e-38 164.9 360 33.9
Psat4g187360 Pisum sativum HOM05D008547 ORTHO05D010515 6.1e-38 162.5 370 30.8
TPR.G8333 Trifolium pratense HOM05D008547 ORTHO05D010515 1.0e-37 161.8 365 32.1
Dinv07586 Davidia involucrata HOM05D006664 ORTHO05D009007 3.3e-36 156.8 331 31.1
CSS0003999 Camellia sinensis var. sinensis HOM05D006664 ORTHO05D009007 1.3e-35 154.8 367 31.1
TPR.G27684 Trifolium pratense HOM05D008547 ORTHO05D010515 6.3e-35 152.5 343 32.9
Psat1g047400 Pisum sativum HOM05D008547 ORTHO05D010515 1.1e-34 151.8 371 29.9
Ca_17126_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 4.5e-33 146.4 369 31.7
TPR.G32061 Trifolium pratense HOM05D008547 ORTHO05D010515 4.5e-33 146.4 382 30.6
Medtr8g065650 Medicago truncatula HOM05D008547 ORTHO05D010515 1.0e-32 145.2 400 29.0
Medtr6g004080 Medicago truncatula HOM05D008547 ORTHO05D010515 1.9e-31 141.0 282 33.7
TPR.G16818 Trifolium pratense HOM05D008547 ORTHO05D010515 4.7e-30 136.3 290 34.1
Medtr1g017800 Medicago truncatula HOM05D008547 ORTHO05D010515 7.9e-30 135.6 349 30.7
Psat4g206720 Pisum sativum HOM05D008547 ORTHO05D010515 1.4e-29 134.8 250 37.6
COL.COLO4_15201 Corchorus olitorius HOM05D008547 ORTHO05D010515 1.8e-29 134.4 238 35.3
COL.COLO4_24243 Corchorus olitorius HOM05D050221 ORTHO05D010515 1.8e-29 134.4 381 30.2
Ca_14816_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 5.1e-29 132.9 394 29.7
Ca_15277_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 5.1e-29 132.9 357 31.1
Ca_15416_v3 Cicer arietinum L. HOM05D008547 ORTHO05D010515 5.1e-29 132.9 357 31.1
Medtr5g090850 Medicago truncatula HOM05D008547 ORTHO05D010515 2.6e-28 130.6 326 29.4
Dinv12853 Davidia involucrata HOM05D006664 ORTHO05D009007 5.7e-28 129.4 330 31.2
TPR.G23739 Trifolium pratense HOM05D008547 ORTHO05D010515 6.3e-27 125.9 228 33.8
Medtr5g012050 Medicago truncatula HOM05D008547 ORTHO05D010515 1.8e-26 124.4 174 40.8
CiPaw.05G236300 Carya illinoinensis HOM05D006664 ORTHO05D009007 3.2e-23 113.6 364 27.2
Migut.D00751 Erythranthe guttata HOM05D006664 ORTHO05D009007 5.5e-23 112.8 353 25.5
Migut.A00601 Erythranthe guttata HOM05D006664 ORTHO05D009007 6.1e-22 109.4 343 26.2
Migut.A00604 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.0e-21 108.6 361 27.1
TAR185G0005 Trochodendron aralioides HOM05D008437 ORTHO05D008819 1.1e-18 98.6 361 26.0
Migut.D00613 Erythranthe guttata HOM05D006664 ORTHO05D009007 2.4e-18 97.4 272 28.7
Actinidia38558 Actinidia chinensis HOM05D006664 ORTHO05D009007 2.0e-17 94.4 306 31.4
Migut.A00619 Erythranthe guttata HOM05D006664 ORTHO05D009007 2.0e-17 94.4 359 25.3
SalBow1G5157 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.5e-17 93.6 272 28.3
Migut.A00598 Erythranthe guttata HOM05D006664 ORTHO05D009007 5.9e-17 92.8 287 27.2
SalBow1G5395 Salvia bowleyana HOM05D006664 ORTHO05D009007 6.5e-16 89.4 261 26.4
Cpa.g.sc73.88 Carica papaya HOM05D006664 ORTHO05D009007 1.9e-15 87.8 268 30.2
Migut.E01487 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.9e-15 87.8 385 23.9
Medtr3g023820 Medicago truncatula HOM05D008547 ORTHO05D010515 1.9e-15 87.8 168 33.9
SalBow1G3386 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.2e-15 86.7 287 25.4
SalBow1G1774 Salvia bowleyana HOM05D006664 ORTHO05D009007 5.5e-15 86.3 362 26.0
Migut.A00599 Erythranthe guttata HOM05D006664 ORTHO05D009007 9.4e-15 85.5 269 27.5
SalBow1G6396 Salvia bowleyana HOM05D006664 ORTHO05D009007 9.4e-15 85.5 286 27.3
TPR.G21917 Trifolium pratense HOM05D008547 ORTHO05D010515 9.4e-15 85.5 142 35.9
SalBow1G5785 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.6e-14 84.7 265 24.9
SalBow1G5956 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.6e-14 83.6 279 26.2
Migut.A00602 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.0e-13 82.0 228 27.2
SalBow1G2059 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.0e-13 82.0 270 25.6
Migut.A00481 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.4e-13 81.6 265 23.8
MD02G1067600 Malus domestica HOM05D009792 ORTHO05D009073 1.4e-13 81.6 320 25.9
SalBow1G7640 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.4e-13 81.6 287 26.5
SalBow1G5259 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.3e-13 80.9 352 23.6
SalBow1G1867 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.0e-13 80.5 352 23.6
SalBow1G2277 Salvia bowleyana HOM05D006664 ORTHO05D009007 3.0e-13 80.5 353 24.4
Migut.E01489 Erythranthe guttata HOM05D006664 ORTHO05D009007 4.0e-13 80.1 328 24.1
SGA_v2.0_scaffold69G23259 Striga asiatica HOM05D006664 ORTHO05D009007 4.0e-13 80.1 198 32.3
SalBow1G0518 Salvia bowleyana HOM05D006664 ORTHO05D009007 5.2e-13 79.7 351 21.9
SalBow1G7502 Salvia bowleyana HOM05D006664 ORTHO05D009007 5.2e-13 79.7 270 26.3
Gohir.D05G386150 Gossypium hirsutum HOM05D008437 ORTHO05D010577 1.5e-12 78.2 408 22.3
SalBow1G2147 Salvia bowleyana HOM05D006664 ORTHO05D009007 1.5e-12 78.2 263 27.0
Migut.A00618 Erythranthe guttata HOM05D006664 ORTHO05D009007 2.0e-12 77.8 299 24.4
SalBow1G0567 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.0e-12 77.8 346 22.8
CiPaw.07G234400 Carya illinoinensis HOM05D007726 ORTHO05D008819 2.6e-12 77.4 405 25.2
Medtr5g013170 Medicago truncatula HOM05D008547 ORTHO05D010515 2.6e-12 77.4 100 38.0
TAR636G0594 Trochodendron aralioides HOM05D006664 ORTHO05D008819 2.6e-12 77.4 184 31.5
Gohir.A04G003750 Gossypium hirsutum HOM05D008437 ORTHO05D010577 3.3e-12 77.0 406 23.4
Gorai.009G452600 Gossypium raimondii HOM05D008437 ORTHO05D010577 4.4e-12 76.6 401 22.7
SalBow1G3006 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.4e-12 76.6 272 26.5
Aqoxy4G00156 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 5.7e-12 76.3 372 26.3
Migut.A00615 Erythranthe guttata HOM05D006664 ORTHO05D009007 5.7e-12 76.3 264 23.9
Psat4g188000 Pisum sativum HOM05D008547 ORTHO05D010515 5.7e-12 76.3 145 32.4
SalBow1G1554 Salvia bowleyana HOM05D006664 ORTHO05D009007 5.7e-12 76.3 274 25.9
SalBow1G3269 Salvia bowleyana HOM05D006664 ORTHO05D009007 5.7e-12 76.3 398 22.9
Medtr1g103170 Medicago truncatula HOM05D008547 ORTHO05D010515 7.5e-12 75.9 141 36.9
Nn8g40182 Nelumbo nucifera HOM05D008437 ORTHO05D008819 1.7e-11 74.7 331 25.1
Migut.A00084 Erythranthe guttata HOM05D006664 ORTHO05D009007 3.7e-11 73.6 369 24.7
SalBow1G4503 Salvia bowleyana HOM05D000486 ORTHO05D009007 4.8e-11 73.2 258 23.3
SalBow1G6969 Salvia bowleyana HOM05D006664 ORTHO05D009007 8.2e-11 72.4 246 26.4
TAR624G0326 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.1e-10 72.0 245 24.1
TAR381G1565 Trochodendron aralioides HOM05D007726 ORTHO05D008819 1.4e-10 71.6 380 26.3
Atru.chr13.2339 Acer truncatum HOM05D007726 ORTHO05D008819 2.4e-10 70.9 407 23.8
SalBow1G0552 Salvia bowleyana HOM05D006664 ORTHO05D009007 2.4e-10 70.9 372 23.9
Thecc.06G116700 Theobroma cacao HOM05D008547 ORTHO05D010515 2.4e-10 70.9 258 24.8
Ciclev10020371m.g Citrus clementina HOM05D007726 ORTHO05D008819 3.1e-10 70.5 380 25.3
SalBow1G1954 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.1e-10 70.1 373 23.3
SalBow1G4853 Salvia bowleyana HOM05D006664 ORTHO05D009007 4.1e-10 70.1 373 23.3
Aqoxy4G00777 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 9.1e-10 68.9 372 25.0
Hma1.2p1_0244F.1_g101190 Hydrangea macrophylla HOM05D008437 ORTHO05D010577 3.5e-09 67.0 300 26.0
Actinidia13257 Actinidia chinensis HOM05D007726 ORTHO05D008819 4.5e-09 66.6 315 25.1
unitig_26.g8888 Utricularia gibba HOM05D000007 ORTHO05D000017 5.9e-09 66.2 286 26.6
COL.COLO4_27629 Corchorus olitorius HOM05D008437 ORTHO05D010577 1.0e-08 65.5 375 23.2
Migut.H00393 Erythranthe guttata HOM05D006664 ORTHO05D009007 1.3e-08 65.1 235 25.1
TAR624G0322 Trochodendron aralioides HOM05D000007 ORTHO05D000521 1.7e-08 64.7 213 24.9
Medtr5g013160 Medicago truncatula HOM05D008547 ORTHO05D010515 3.8e-08 63.5 108 35.2
Peaxi162Scf00141g00138 Petunia axillaris HOM05D008437 ORTHO05D010577 3.8e-08 63.5 279 22.6
Aqoxy4G00159 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 6.5e-08 62.8 152 30.3
Aqoxy5G04106 Aquilegia oxysepala HOM05D007726 ORTHO05D008819 6.5e-08 62.8 192 29.7
Actinidia13258 Actinidia chinensis HOM05D007726 ORTHO05D008819 1.1e-07 62.0 321 23.4
Aqoxy52s004 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 1.9e-07 61.2 152 29.6
Aqoxy1G01388 Aquilegia oxysepala HOM05D017325 ORTHO05D008819 3.2e-07 60.5 129 34.9
CAN.G1058.31 Capsicum annuum HOM05D000171 ORTHO05D000101 5.5e-07 59.7 200 27.5
COL.COLO4_14611 Corchorus olitorius HOM05D008437 ORTHO05D010577 5.5e-07 59.7 265 24.5
TPR.G20414 Trifolium pratense HOM05D008547 ORTHO05D010515 5.5e-07 59.7 101 40.6
Os04g0191600 Oryza sativa ssp. japonica HOM05D011488 ORTHO05D013340 7.2e-07 59.3 240 25.4
Ah.13g070150 Amaranthus hybridus HOM05D000007 ORTHO05D000017 2.1e-06 57.8 282 23.0
AUR62019384 Chenopodium quinoa HOM05D000007 ORTHO05D000017 2.1e-06 57.8 283 23.0
Os04g0191800 Oryza sativa ssp. japonica HOM05D011488 ORTHO05D013340 2.7e-06 57.4 246 25.6
Lj8C593T5 Lonicera japonica HOM05D000007 ORTHO05D000521 4.7e-06 56.6 172 25.6
COL.COLO4_32922 Corchorus olitorius HOM05D007560 ORTHO05D005947 6.1e-06 56.2 243 28.0
Lj6A793G95 Lonicera japonica HOM05D006664 ORTHO05D009007 8.0e-06 55.8 99 31.3
PSO832G0564 Papaver somniferum HOM05D000007 ORTHO05D000676 8.0e-06 55.8 269 26.4


User provided reference genes

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