Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 7.1e-105 384.0 206 100.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.8e-52 209.9 121 95.9
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.7e-45 186.8 121 85.1
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.3e-45 184.9 121 82.6
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.2e-43 180.6 121 81.0
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 4.5e-43 178.7 121 79.3
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.0e-42 177.6 119 80.7
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.3e-42 177.2 121 80.2
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 2.2e-42 176.4 121 79.3
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 3.8e-42 175.6 121 79.3
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 6.5e-42 174.9 121 77.7
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 8.5e-42 174.5 121 76.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.1e-41 174.1 121 79.3
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.2e-41 172.6 121 76.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.2e-41 172.6 119 78.2
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.2e-41 172.2 121 76.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 4.2e-41 172.2 119 79.0
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 7.2e-41 171.4 121 76.0
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 7.2e-41 171.4 121 75.2
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 9.4e-41 171.0 121 76.0
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-40 170.6 119 77.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.2e-40 170.6 119 77.3
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.7e-40 168.7 121 74.4
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 4.7e-40 168.7 121 74.4
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 8.0e-40 167.9 121 72.7
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.0e-39 167.5 121 75.2
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.8e-39 166.8 121 72.7
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 3.0e-39 166.0 121 71.9
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.0e-39 166.0 114 78.9
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 5.2e-39 165.2 121 71.9
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 6.8e-39 164.9 121 72.7
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.2e-38 164.1 121 69.4
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 3.4e-38 162.5 121 71.9
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.4e-38 162.2 120 72.5
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 9.8e-38 161.0 121 71.9
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.3e-37 160.6 121 68.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 2.2e-37 159.8 121 73.6
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 3.7e-37 159.1 121 71.1
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 4.8e-37 158.7 121 66.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.3e-37 157.9 121 70.2
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 8.3e-37 157.9 121 70.2
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.8e-36 156.8 121 69.4
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.8e-36 156.8 121 74.4
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 3.1e-36 156.0 121 66.9
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 5.4e-36 155.2 119 72.3
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 9.1e-36 154.5 93 93.5
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 9.1e-36 154.5 121 65.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.2e-35 154.1 93 92.5
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-35 152.5 92 92.4
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-35 152.5 92 92.4
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 3.5e-35 152.5 92 92.4
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 4.5e-35 152.1 121 67.8
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.5e-35 152.1 119 69.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.5e-35 152.1 119 69.7
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-35 151.8 119 69.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 5.9e-35 151.8 121 68.6
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.3e-34 150.6 121 66.1
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.3e-34 149.8 92 91.3
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.5e-34 148.3 119 68.1
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 6.5e-34 148.3 121 65.3
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.1e-33 147.5 121 65.3
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.1e-33 147.5 121 63.6
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.5e-33 147.1 122 65.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.9e-33 146.7 119 69.7
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.2e-32 144.1 121 63.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.6e-32 143.7 122 64.8
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 4.7e-32 142.1 122 63.1
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.0e-31 141.0 121 66.1
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.4e-31 140.6 122 63.1
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 5.2e-31 138.7 121 61.2
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 8.9e-31 137.9 122 62.3
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.2e-30 137.5 112 63.4
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.0e-30 136.7 121 59.5
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 2.6e-30 136.3 119 61.3
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.4e-30 136.0 122 62.3
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 5.7e-30 135.2 118 66.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 7.5e-30 134.8 92 80.4
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.3e-29 134.0 121 59.5
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.3e-29 134.0 121 62.8
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 2.2e-29 133.3 119 63.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.2e-29 133.3 111 64.0
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 2.2e-29 133.3 119 61.3
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.2e-29 133.3 121 57.0
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 4.9e-29 132.1 121 61.2
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 6.3e-29 131.7 126 59.5
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 7.0e-28 128.3 126 57.9
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 7.0e-28 128.3 121 62.8
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.2e-27 127.5 121 55.4
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.7e-27 126.3 126 57.9
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.5e-27 125.6 119 63.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.3e-26 124.0 124 58.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.7e-26 123.6 129 58.9
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.5e-25 120.6 119 59.7
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 2.5e-25 119.8 126 55.6
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 2.5e-25 119.8 141 51.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.5e-25 119.8 121 56.2
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 4.3e-25 119.0 126 54.8
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 5.6e-25 118.6 126 54.8
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 5.6e-25 118.6 126 54.8
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 5.6e-25 118.6 126 54.8
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 7.3e-25 118.2 126 54.8
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 2.1e-24 116.7 126 54.0
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 2.1e-24 116.7 126 54.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 2.8e-24 116.3 119 56.3
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.6e-24 115.9 119 56.3
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 3.6e-24 115.9 126 54.0
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 3.6e-24 115.9 119 52.9
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.0e-22 110.2 79 73.4
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 9.8e-22 107.8 119 52.1
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.3e-21 107.5 123 52.0
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.1e-20 104.4 121 51.2
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.1e-20 104.4 121 51.2
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.8e-20 103.6 107 49.5
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 2.4e-20 103.2 119 52.9
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 7.0e-20 101.7 121 48.8
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.3e-18 97.4 103 58.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 1.3e-18 97.4 121 47.1
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 3.9e-18 95.9 59 89.8
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.6e-18 94.7 103 57.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 9.5e-17 91.3 119 50.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.6e-16 90.5 89 57.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 4.4e-14 82.4 90 53.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.9e-12 77.0 62 67.7
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.2e-12 74.7 60 65.0
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.7e-11 73.2 104 51.9
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.7e-11 73.2 104 51.9
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 3.3e-09 66.2 94 45.7
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 4.3e-09 65.9 50 72.0
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.3e-09 65.9 69 59.4
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 3.6e-08 62.8 48 64.6
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 4.7e-08 62.4 77 46.8
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 8.1e-08 61.6 63 55.6
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.8e-07 60.5 65 53.8
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 5.8e-06 55.5 63 54.0


User provided reference genes

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