Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 1.6e-100 369.4 185 100.0
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.4e-30 137.1 68 100.0
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 1.5e-24 117.1 68 86.8
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 9.4e-24 114.4 77 75.3
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.6e-23 113.6 68 83.8
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 3.6e-23 112.5 68 83.8
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 4.7e-23 112.1 68 83.8
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 4.7e-23 112.1 68 83.8
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.8e-22 110.2 68 82.4
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 5.2e-22 108.6 68 80.9
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 1.5e-21 107.1 68 80.9
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 2.0e-21 106.7 68 80.9
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 2.6e-21 106.3 67 74.6
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 7.5e-21 104.8 68 76.5
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 7.5e-21 104.8 68 75.0
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 1.3e-20 104.0 68 77.9
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.7e-20 103.6 68 75.0
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 3.7e-20 102.4 68 73.5
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 4.8e-20 102.1 62 80.6
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 6.3e-20 101.7 88 59.1
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 8.2e-20 101.3 66 74.2
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.1e-19 100.9 68 72.1
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 1.4e-19 100.5 68 73.5
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 1.4e-19 100.5 68 72.1
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 1.8e-19 100.1 65 75.4
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 2.4e-19 99.8 59 81.4
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 2.4e-19 99.8 68 72.1
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 3.1e-19 99.4 68 70.6
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.1e-19 99.4 68 70.6
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 3.1e-19 99.4 72 66.7
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 5.3e-19 98.6 68 70.6
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 7.0e-19 98.2 68 72.1
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 1.2e-18 97.4 59 78.0
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 1.6e-18 97.1 68 75.0
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 2.0e-18 96.7 65 73.8
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 2.0e-18 96.7 65 73.8
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 2.7e-18 96.3 59 78.0
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 2.7e-18 96.3 68 73.5
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 2.7e-18 96.3 68 70.6
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 2.7e-18 96.3 68 72.1
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 4.5e-18 95.5 61 75.4
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 4.5e-18 95.5 66 69.7
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 5.9e-18 95.1 68 75.0
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 5.9e-18 95.1 55 81.8
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 5.9e-18 95.1 65 70.8
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 7.7e-18 94.7 90 56.7
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 7.7e-18 94.7 57 80.7
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 7.7e-18 94.7 57 78.9
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 7.7e-18 94.7 65 72.3
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 7.7e-18 94.7 57 80.7
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 1.0e-17 94.4 64 70.3
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 1.7e-17 93.6 55 81.8
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 1.7e-17 93.6 60 73.3
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 1.7e-17 93.6 61 72.1
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 2.2e-17 93.2 68 64.7
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 2.9e-17 92.8 84 63.1
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 2.9e-17 92.8 68 73.5
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 2.9e-17 92.8 57 78.9
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 2.9e-17 92.8 68 72.1
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 2.9e-17 92.8 57 78.9
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 2.9e-17 92.8 66 66.7
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 2.9e-17 92.8 68 64.7
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 2.9e-17 92.8 63 74.6
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 3.8e-17 92.4 59 74.6
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 3.8e-17 92.4 59 74.6
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 3.8e-17 92.4 66 66.7
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 5.0e-17 92.0 68 72.1
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 6.5e-17 91.7 69 71.0
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 8.5e-17 91.3 59 74.6
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.1e-16 90.9 60 78.3
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.5e-16 90.5 64 68.8
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 2.5e-16 89.7 53 81.1
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 4.2e-16 89.0 77 59.7
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 5.5e-16 88.6 70 62.9
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 7.2e-16 88.2 68 67.6
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 7.2e-16 88.2 68 69.1
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 7.2e-16 88.2 54 75.9
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.6e-15 87.0 64 67.2
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 2.1e-15 86.7 68 67.6
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 2.7e-15 86.3 87 56.3
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 2.7e-15 86.3 56 71.4
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 2.7e-15 86.3 61 70.5
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 3.6e-15 85.9 64 65.6
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 3.6e-15 85.9 55 74.5
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 3.6e-15 85.9 63 69.8
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 6.1e-15 85.1 61 70.5
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 6.1e-15 85.1 61 70.5
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 8.0e-15 84.7 55 74.5
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 1.0e-14 84.3 55 72.7
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 1.0e-14 84.3 55 72.7
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 1.0e-14 84.3 61 68.9
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 1.0e-14 84.3 55 72.7
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 1.0e-14 84.3 55 72.7
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 1.4e-14 84.0 75 57.3
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 1.4e-14 84.0 55 72.7
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 1.4e-14 84.0 61 68.9
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.4e-14 84.0 61 75.4
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 1.4e-14 84.0 61 75.4
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 2.3e-14 83.2 59 69.5
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 3.0e-14 82.8 65 66.2
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 5.2e-14 82.0 52 75.0
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 1.2e-13 80.9 56 69.6
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 2.8e-12 76.3 44 79.5
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 4.8e-12 75.5 47 74.5
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 8.3e-12 74.7 55 63.6
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 4.1e-11 72.4 42 78.6
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 2.5e-08 63.2 44 68.2
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 3.2e-08 62.8 46 63.0
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 4.7e-07 58.9 55 56.4


User provided reference genes

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