Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MPB88K Arachis hypogaea HOM05D005244 ORTHO05D006539 0.0e+00 1935.6 970 100.0
arahy.Tifrunner.gnm1.ann1.GU0YFX Arachis hypogaea HOM05D005244 ORTHO05D006539 0.0e+00 1904.8 1003 96.2
Glyma.01G000900 Glycine max HOM05D005244 ORTHO05D006539 0.0e+00 1630.2 972 83.7
Lj2g0016843 Lotus japonicus HOM05D005244 ORTHO05D006539 0.0e+00 1569.7 945 82.3
VMungo0464G0587 Vigna mungo HOM05D005244 ORTHO05D006539 0.0e+00 1568.9 921 83.9
Psat1g052040 Pisum sativum HOM05D005244 ORTHO05D006539 0.0e+00 1546.2 942 81.6
Ca_25641_v3 Cicer arietinum L. HOM05D005244 ORTHO05D006539 0.0e+00 1545.0 934 82.2
Medtr5g019500 Medicago truncatula HOM05D005244 ORTHO05D006539 0.0e+00 1531.9 931 82.0
TPR.G18623 Trifolium pratense HOM05D005244 ORTHO05D006539 0.0e+00 1496.5 938 80.5
Glyma.08G360000 Glycine max HOM05D005244 ORTHO05D006539 0.0e+00 1471.8 840 85.5
CiPaw.07G237900 Carya illinoinensis HOM05D005244 ORTHO05D006539 0.0e+00 1469.1 925 79.1
QL11p005809 Quercus lobata HOM05D005244 ORTHO05D006539 0.0e+00 1468.4 952 76.8
QL11p006533 Quercus lobata HOM05D005244 ORTHO05D006539 0.0e+00 1466.4 952 76.6
TWI34G0889 Tripterygium wilfordii HOM05D005244 ORTHO05D006539 0.0e+00 1456.0 938 77.1
Prupe.1G001000 Prunus persica HOM05D005244 ORTHO05D006539 0.0e+00 1447.2 925 77.2
Atru.chr7.1024 Acer truncatum HOM05D005244 ORTHO05D006539 0.0e+00 1444.9 898 79.4
Manes.02G225500 Manihot esculenta HOM05D005244 ORTHO05D006539 0.0e+00 1444.5 931 77.6
MD04G1001000 Malus domestica HOM05D005244 ORTHO05D006539 0.0e+00 1436.8 925 77.0
Dinv12631 Davidia involucrata HOM05D005244 ORTHO05D006539 0.0e+00 1436.4 930 76.8
Thecc.09G197300 Theobroma cacao HOM05D005244 ORTHO05D006539 0.0e+00 1423.7 931 76.0
TAR383G0812 Trochodendron aralioides HOM05D005244 ORTHO05D006539 0.0e+00 1407.1 931 76.2
Potri.006G080700 Populus trichocarpa HOM05D005244 ORTHO05D006539 0.0e+00 1406.0 937 74.5
Nn8g41249 Nelumbo nucifera HOM05D005244 ORTHO05D006539 0.0e+00 1397.5 940 74.6
MSTRG.26510 Avicennia marina HOM05D005244 ORTHO05D006539 0.0e+00 1393.6 934 74.4
Actinidia02527 Actinidia chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1391.3 926 75.2
PGR044G0827 Punica granatum HOM05D005244 ORTHO05D006539 0.0e+00 1390.9 934 74.5
CSS0037198 Camellia sinensis var. sinensis HOM05D005244 ORTHO05D006539 0.0e+00 1390.6 948 73.9
Eucgr.C02153 Eucalyptus grandis HOM05D005244 ORTHO05D006539 0.0e+00 1382.1 943 73.0
COL.COLO4_08830 Corchorus olitorius HOM05D005244 ORTHO05D006539 0.0e+00 1379.0 951 72.6
MELO3C010012.2 Cucumis melo HOM05D005244 ORTHO05D006539 0.0e+00 1377.8 942 73.0
CAN.G57.4 Capsicum annuum HOM05D005244 ORTHO05D006539 0.0e+00 1377.1 928 73.3
CsaV3_1G044170 Cucumis sativus L. HOM05D005244 ORTHO05D006539 0.0e+00 1377.1 933 73.4
Gohir.A08G016900 Gossypium hirsutum HOM05D005244 ORTHO05D006539 0.0e+00 1377.1 931 73.1
Sopen07g022510 Solanum pennellii HOM05D005244 ORTHO05D006539 0.0e+00 1376.7 928 73.6
Potri.018G150600 Populus trichocarpa HOM05D005244 ORTHO05D006539 0.0e+00 1370.9 901 75.1
Gorai.004G024200 Gossypium raimondii HOM05D005244 ORTHO05D006539 0.0e+00 1370.5 931 72.8
Gohir.D08G027300 Gossypium hirsutum HOM05D005244 ORTHO05D006539 0.0e+00 1368.2 931 72.8
Nitab4.5_0000807g0220 Nicotiana tabacum HOM05D005244 ORTHO05D006539 0.0e+00 1366.7 906 74.3
Sed0018574 Sechium edule HOM05D005244 ORTHO05D006539 0.0e+00 1366.3 943 72.4
GSVIVG01034254001 Vitis vinifera HOM05D005244 ORTHO05D006539 0.0e+00 1360.1 1165 62.1
Nitab4.5_0000170g0280 Nicotiana tabacum HOM05D005244 ORTHO05D006539 0.0e+00 1359.4 906 74.1
Aqoxy7G02584 Aquilegia oxysepala HOM05D005244 ORTHO05D006539 0.0e+00 1356.7 940 71.4
Lju50C34G1 Lonicera japonica HOM05D005244 ORTHO05D006539 0.0e+00 1351.7 1017 67.8
RcHm_v2.0_Chr4g0393651 Rosa chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1351.3 930 71.8
CANSAT80G0544 Cannabis sativa HOM05D005244 ORTHO05D006539 0.0e+00 1348.2 945 72.7
SGA_v2.0_scaffold21G09589 Striga asiatica HOM05D005244 ORTHO05D006539 0.0e+00 1342.8 932 72.3
Lsat_1_v5_gn_5_80020 Lactuca sativa HOM05D005244 ORTHO05D006539 0.0e+00 1338.9 931 71.6
THA.LOC104817833 Tarenaya hassleriana HOM05D005244 ORTHO05D006539 0.0e+00 1338.2 924 72.6
AT5G58100 Arabidopsis thaliana HOM05D005244 ORTHO05D006539 0.0e+00 1334.7 926 70.7
AL8G34210 Arabidopsis lyrata HOM05D005244 ORTHO05D006539 0.0e+00 1332.8 926 70.4
Ciclev10007431m.g Citrus clementina HOM05D005244 ORTHO05D006539 0.0e+00 1328.5 851 77.0
FvH4_4g03800 Fragaria vesca HOM05D005244 ORTHO05D006539 0.0e+00 1328.2 926 71.1
Migut.L01612 Erythranthe guttata HOM05D005244 ORTHO05D006539 0.0e+00 1327.4 1017 67.2
FAN12G3076 Fragaria x ananassa HOM05D005244 ORTHO05D006539 0.0e+00 1327.0 926 71.1
FAN12G3464 Fragaria x ananassa HOM05D005244 ORTHO05D006539 0.0e+00 1327.0 926 71.1
Solyc07g042910.4 Solanum lycopersicum HOM05D005244 ORTHO05D006539 0.0e+00 1325.1 1051 65.0
Duzib168G0486 Durio zibethinus HOM05D005244 ORTHO05D006539 0.0e+00 1324.3 931 71.9
FAN22G0231 Fragaria x ananassa HOM05D005244 ORTHO05D006539 0.0e+00 1323.9 938 70.7
AUR62020750 Chenopodium quinoa HOM05D005244 ORTHO05D006539 0.0e+00 1321.2 946 69.3
Cc06_g23580 Coffea canephora HOM05D005244 ORTHO05D006539 0.0e+00 1321.2 1074 64.3
Thhalv10012595m.g Eutrema salsugineum HOM05D005244 ORTHO05D006539 0.0e+00 1319.7 926 70.2
MBI16_g40729_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 0.0e+00 1316.6 957 69.1
Sp6g19790 Schrenkiella parvula HOM05D005244 ORTHO05D006539 0.0e+00 1315.8 926 70.0
BcaB08g36163 Brassica carinata HOM05D005244 ORTHO05D006539 0.0e+00 1315.1 925 70.1
BcaC04g19907 Brassica carinata HOM05D005244 ORTHO05D006539 0.0e+00 1314.7 931 69.4
Carub.0008s1866 Capsella rubella HOM05D005244 ORTHO05D006539 0.0e+00 1314.3 926 69.7
C09p50010 Brassica napus HOM05D005244 ORTHO05D006539 0.0e+00 1313.1 931 69.4
vmacro20731 Vaccinium macrocarpon HOM05D005244 ORTHO05D006539 0.0e+00 1311.6 1075 64.1
ECA234G0362 Erigeron canadensis HOM05D005244 ORTHO05D006539 0.0e+00 1311.2 926 69.3
HanXRQChr10g0309401 Helianthus annuus HOM05D005244 ORTHO05D006539 0.0e+00 1309.7 935 69.5
PSO170G3502 Papaver somniferum HOM05D005244 ORTHO05D006539 0.0e+00 1304.3 937 69.7
ATR0626G132 Amborella trichopoda HOM05D005244 ORTHO05D006539 0.0e+00 1300.8 936 70.0
PSO063G2947 Papaver somniferum HOM05D005244 ORTHO05D006539 0.0e+00 1300.4 937 69.6
BolC9t57854H Brassica oleracea HOM05D005244 ORTHO05D006539 0.0e+00 1297.3 970 66.6
EL10Ac2g03605 Beta vulgaris HOM05D005244 ORTHO05D006539 0.0e+00 1286.6 923 68.6
BraA10t43621Z Brassica rapa HOM05D005244 ORTHO05D006539 0.0e+00 1286.2 979 66.1
CDE05G2480 Ceratophyllum demersum HOM05D005244 ORTHO05D006539 0.0e+00 1281.9 936 67.7
Hund03212 Selenicereus undatus HOM05D005244 ORTHO05D006539 0.0e+00 1278.1 944 67.5
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 0.0e+00 1274.6 891 69.5
Sc25g0001730 Simmondsia chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1272.7 873 72.6
Rhsim01G0102600 Rhododendron simsii HOM05D005244 ORTHO05D006539 0.0e+00 1243.4 1003 65.1
Actinidia07539 Actinidia chinensis HOM05D005244 ORTHO05D006539 0.0e+00 1238.0 868 72.7
Peaxi162Scf01347g00132 Petunia axillaris HOM05D005244 ORTHO05D006539 0.0e+00 1211.8 889 68.7
DCAR_020446 Daucus carota HOM05D005244 ORTHO05D006539 0.0e+00 1160.6 943 63.9
Oeu021241.1 Olea europaea HOM05D005244 ORTHO05D006539 0.0e+00 1155.2 873 68.2
Zm00001eb240720 Zea mays HOM05D005244 ORTHO05D006539 0.0e+00 1111.3 947 59.0
Haze_21246 Corylus avellana HOM05D005244 ORTHO05D006539 0.0e+00 1099.0 828 69.4
A10p16080 Brassica napus HOM05D005244 ORTHO05D006539 8.6e-302 1040.4 931 58.8
unitig_899.g15185 Utricularia gibba HOM05D005244 ORTHO05D006539 8.0e-300 1033.9 906 59.5
HPP92_015784 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.0e-299 1033.5 915 58.9
AUR62027963 Chenopodium quinoa HOM05D005244 ORTHO05D006539 4.3e-293 1011.5 949 56.9
CARHR271920 Cardamine hirsuta HOM05D005244 ORTHO05D006539 1.2e-255 887.1 555 78.6
Mapoly0125s0017 Marchantia polymorpha HOM05D005244 ORTHO05D006539 2.5e-253 879.4 925 48.9
Pp3c14_21030 Physcomitrium patens HOM05D005244 ORTHO05D006539 5.5e-248 861.7 932 47.7
HPP92_015795 Vanilla planifolia HOM05D005244 ORTHO05D006539 2.3e-246 856.3 765 57.8
Hund19348 Selenicereus undatus HOM05D005244 ORTHO05D006539 1.5e-234 817.0 914 50.3
SMO367G0058 Selaginella moellendorffii HOM05D005244 ORTHO05D006539 6.5e-233 811.6 929 44.7
Sed0023758 Sechium edule HOM05D005244 ORTHO05D006539 4.5e-218 762.3 493 75.9
Cpa.g.sc91.77 Carica papaya HOM05D005244 ORTHO05D006539 3.8e-209 732.6 438 81.3
ClCG03G011620 Citrullus lanatus HOM05D005244 ORTHO05D006539 7.7e-194 681.8 492 70.5
Sed0028124 Sechium edule HOM05D005244 ORTHO05D006539 3.2e-171 606.7 451 67.6
ClCG03G011630 Citrullus lanatus HOM05D005244 ORTHO05D006539 7.1e-171 605.5 450 67.8
SalBow5G4830 Salvia bowleyana HOM05D005244 ORTHO05D006539 4.6e-170 602.8 442 68.3
HPP92_015814 Vanilla planifolia HOM05D005244 ORTHO05D006539 1.2e-162 578.2 654 49.8
Sed0013671 Sechium edule HOM05D005244 ORTHO05D006539 4.5e-149 533.1 452 62.6
SEGI_37412 Sequoiadendron giganteum HOM05D005244 ORTHO05D006539 4.0e-142 510.0 391 63.9
CBR_g22899 Chara braunii HOM05D005244 ORTHO05D006539 2.1e-138 497.7 967 33.8
CBR_g983 Chara braunii HOM05D005244 ORTHO05D006539 3.0e-137 493.8 1071 30.6
Lalb_Chr22g0361681 Lupinus albus HOM05D005244 ORTHO05D006539 1.6e-130 471.5 327 73.4
SHI03158 Sapria himalayana HOM05D005244 ORTHO05D006539 4.5e-125 453.4 460 53.5
Cpa.g.sc91.76 Carica papaya HOM05D005244 ORTHO05D006539 3.9e-121 440.3 368 61.4
HPP92_015817 Vanilla planifolia HOM05D005244 ORTHO05D006539 6.1e-114 416.4 655 39.8
MCO06G232 Micromonas commoda HOM05D005244 ORTHO05D006539 1.6e-98 365.2 982 28.7
Hma1.2p1_0394F.1_g143220 Hydrangea macrophylla HOM05D005244 ORTHO05D006539 4.2e-83 313.9 201 76.6
CiPaw.07G231500 Carya illinoinensis HOM05D005244 ORTHO05D006539 3.3e-75 287.7 202 71.8
Cre16.g680450 Chlamydomonas reinhardtii HOM05D005244 ORTHO05D006539 2.2e-71 275.0 1073 24.5
Os02g0469200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 2.2e-71 275.0 249 59.0
Os03g0570200 Oryza sativa ssp. japonica HOM05D005244 ORTHO05D006539 3.1e-65 254.6 255 53.7
QL01p000012 Quercus lobata HOM05D005244 ORTHO05D006539 8.9e-57 226.5 225 54.7
Duzib170G1117 Durio zibethinus HOM05D005244 ORTHO05D006539 9.9e-56 223.0 162 67.9
SalBow7G2907 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.1e-46 193.0 138 67.4
SalBow8G4401 Salvia bowleyana HOM05D005244 ORTHO05D006539 1.9e-46 192.2 138 66.7
HPP92_015815 Vanilla planifolia HOM05D005244 ORTHO05D006539 5.4e-46 190.7 164 61.0
MBI16_g00817_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 3.6e-42 177.9 287 39.7
SalBow6G0925 Salvia bowleyana HOM05D005244 ORTHO05D006539 4.0e-41 174.5 174 53.4
Zm00001eb016210 Zea mays HOM05D005244 ORTHO05D006539 7.6e-40 170.2 134 64.2
Zm00001eb270590 Zea mays HOM05D005244 ORTHO05D006539 9.9e-40 169.9 146 61.6
Zm00001eb175510 Zea mays HOM05D005244 ORTHO05D006539 1.3e-39 169.5 128 66.4
Lj5g0018939 Lotus japonicus HOM05D005244 ORTHO05D006539 8.4e-39 166.8 206 48.1
Zm00001eb357680 Zea mays HOM05D005244 ORTHO05D006539 9.3e-38 163.3 118 67.8
SalBow2G0201 Salvia bowleyana HOM05D005244 ORTHO05D006539 5.1e-36 157.5 110 69.1
HPP92_015816 Vanilla planifolia HOM05D005244 ORTHO05D006539 3.3e-27 128.3 82 73.2
Zm00001eb035880 Zea mays HOM05D005244 ORTHO05D006539 2.8e-26 125.2 90 66.7
HanXRQChr14g0448901 Helianthus annuus HOM05D005244 ORTHO05D006539 7.6e-24 117.1 102 58.8
HPP92_015796 Vanilla planifolia HOM05D005244 ORTHO05D006539 9.9e-24 116.7 164 46.3
Zm00001eb063080 Zea mays HOM05D005244 ORTHO05D006539 1.4e-22 112.8 85 65.9
MELO3C032112.2 Cucumis melo HOM05D000002 ORTHO05D000001 2.7e-21 108.6 93 57.0
SHI03161 Sapria himalayana HOM05D005244 ORTHO05D006539 6.0e-21 107.5 83 62.7
Cpa.g.sc91.78 Carica papaya HOM05D005244 ORTHO05D006539 4.8e-18 97.8 57 77.2
Os06g0584200 Oryza sativa ssp. japonica HOM05D007118 ORTHO05D008957 1.8e-17 95.9 348 25.0
Cpa.g.sc14.37 Carica papaya HOM05D007118 ORTHO05D008957 2.4e-17 95.5 300 26.3
Rhsim08G0066600 Rhododendron simsii HOM05D007118 ORTHO05D008957 6.9e-17 94.0 350 25.7
SHI04174 Sapria himalayana HOM05D007118 ORTHO05D008957 9.0e-17 93.6 332 25.3
Lsat_1_v5_gn_1_86520 Lactuca sativa HOM05D005244 ORTHO05D029965 1.3e-15 89.7 67 68.7
Zm00001eb385570 Zea mays HOM05D007118 ORTHO05D008957 1.3e-15 89.7 348 23.9
Duzib147G0587 Durio zibethinus HOM05D007118 ORTHO05D008957 2.2e-15 89.0 198 31.3
FAN02G1928 Fragaria x ananassa HOM05D007118 ORTHO05D008957 2.2e-15 89.0 326 24.8
Carub.0005s0727 Capsella rubella HOM05D007118 ORTHO05D008957 3.8e-15 88.2 304 24.7
Gorai.006G025500 Gossypium raimondii HOM05D007118 ORTHO05D008957 3.8e-15 88.2 301 25.2
Sc14g0006000 Simmondsia chinensis HOM05D007118 ORTHO05D008957 3.8e-15 88.2 301 24.6
Thecc.04G076000 Theobroma cacao HOM05D007118 ORTHO05D008957 3.8e-15 88.2 199 31.2
ATR1120G196 Amborella trichopoda HOM05D007118 ORTHO05D008957 4.9e-15 87.8 310 26.5
Atru.chr8.1899 Acer truncatum HOM05D007118 ORTHO05D008957 6.5e-15 87.4 326 24.2
Gohir.A09G022300 Gossypium hirsutum HOM05D007118 ORTHO05D008957 8.4e-15 87.0 301 24.9
MSTRG.3219 Avicennia marina HOM05D007118 ORTHO05D008957 1.4e-14 86.3 214 29.4
Gohir.D09G021500 Gossypium hirsutum HOM05D007118 ORTHO05D008957 1.4e-14 86.3 301 24.9
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 4.2e-14 84.7 70 64.3
unitig_899.g15508 Utricularia gibba HOM05D007118 ORTHO05D008957 1.2e-13 83.2 232 29.3
CDE04G1934 Ceratophyllum demersum HOM05D007118 ORTHO05D008957 2.1e-13 82.4 550 22.5
PGR083G1725 Punica granatum HOM05D007118 ORTHO05D008957 4.6e-13 81.3 310 24.8
HPP92_003624 Vanilla planifolia HOM05D007118 ORTHO05D008957 2.3e-12 79.0 271 24.7
MBI16_g00818_MAGBIO Magnolia biondii HOM05D005244 ORTHO05D006539 1.5e-11 76.3 113 45.1
Lsat_1_v5_gn_3_57281 Lactuca sativa HOM05D003275 ORTHO05D006539 2.2e-10 72.4 51 72.5
Lsat_1_v5_gn_4_83721 Lactuca sativa HOM05D000104 ORTHO05D008354 1.4e-09 69.7 60 61.7
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.3e-09 67.8 85 47.1
MELO3C028251.2 Cucumis melo HOM05D005244 ORTHO05D006539 1.5e-08 66.2 60 50.0
AUR62039265 Chenopodium quinoa HOM05D004819 ORTHO05D005654 7.2e-06 57.4 306 19.9
EL10Ac3g05522 Beta vulgaris HOM05D004819 ORTHO05D005654 9.3e-06 57.0 361 19.1


User provided reference genes

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