Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 6.4e-88 327.4 168 100.0
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 1.1e-76 290.0 155 96.8
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 2.8e-67 258.8 185 75.1
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 3.4e-65 251.9 195 72.3
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 1.4e-63 246.5 189 71.4
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 7.2e-63 244.2 175 73.1
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 1.6e-62 243.0 181 71.3
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 2.7e-62 242.3 169 74.6
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 1.8e-61 239.6 186 69.4
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 9.0e-58 227.3 179 67.6
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 3.4e-57 225.3 187 62.6
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 7.7e-57 224.2 181 64.6
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 1.3e-56 223.4 165 70.3
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 1.7e-56 223.0 165 69.1
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 2.9e-56 222.2 165 67.3
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 3.8e-56 221.9 180 65.6
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 1.4e-55 219.9 165 67.9
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.4e-55 219.9 165 66.7
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 2.5e-55 219.2 165 67.3
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 2.5e-55 219.2 165 67.9
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 4.2e-55 218.4 174 64.9
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 7.2e-55 217.6 174 64.9
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 1.6e-54 216.5 165 65.5
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 2.1e-54 216.1 185 63.2
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 2.1e-54 216.1 179 63.7
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 4.6e-54 214.9 194 60.8
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 4.6e-54 214.9 179 62.6
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 4.6e-54 214.9 187 62.6
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 6.1e-54 214.5 173 63.6
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 7.9e-54 214.2 179 63.7
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 7.9e-54 214.2 196 59.2
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 1.0e-53 213.8 185 62.7
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 1.4e-53 213.4 185 62.2
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 1.4e-53 213.4 185 62.7
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 1.8e-53 213.0 180 61.1
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.8e-53 213.0 185 62.7
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 3.9e-53 211.8 179 62.0
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 3.9e-53 211.8 179 62.0
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 3.9e-53 211.8 179 62.6
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 3.9e-53 211.8 180 62.8
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 6.7e-53 211.1 179 61.5
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 6.7e-53 211.1 165 64.2
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 6.7e-53 211.1 180 61.7
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 1.1e-52 210.3 178 60.7
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 1.1e-52 210.3 138 77.5
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 1.1e-52 210.3 179 64.8
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 1.1e-52 210.3 177 59.3
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 1.1e-52 210.3 165 65.5
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 1.5e-52 209.9 178 62.9
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 2.0e-52 209.5 179 60.9
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 2.0e-52 209.5 179 60.9
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 2.5e-52 209.1 187 61.0
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 2.5e-52 209.1 185 61.6
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 7.4e-52 207.6 199 58.8
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 1.7e-51 206.5 160 65.6
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 1.7e-51 206.5 172 58.7
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 2.2e-51 206.1 165 64.2
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 2.2e-51 206.1 175 60.6
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 2.8e-51 205.7 165 63.6
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 3.7e-51 205.3 165 64.2
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 1.4e-50 203.4 158 65.2
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 2.4e-50 202.6 164 59.1
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 3.1e-50 202.2 158 64.6
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 9.1e-50 200.7 158 65.2
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 1.5e-49 199.9 172 64.0
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 4.5e-49 198.4 158 63.3
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 2.2e-48 196.1 167 58.1
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 2.9e-48 195.7 163 64.4
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 1.1e-47 193.7 183 53.6
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 3.6e-46 188.7 178 59.0
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 1.8e-45 186.4 165 57.0
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 2.3e-45 186.0 172 58.7
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 3.0e-45 185.7 172 59.3
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 3.9e-45 185.3 188 54.3
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 1.1e-44 183.7 149 64.4
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 1.5e-44 183.3 161 57.8
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 1.3e-43 180.3 146 65.1
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 1.3e-43 180.3 173 57.2
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 4.8e-43 178.3 174 54.6
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 5.9e-41 171.4 162 52.5
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 2.2e-40 169.5 144 60.4
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 1.5e-39 166.8 161 49.7
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 1.9e-39 166.4 164 52.4
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 4.7e-38 161.8 262 39.3
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 8.0e-38 161.0 158 50.6
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 2.3e-37 159.5 156 50.0
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 2.8e-35 152.5 177 43.5
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 2.7e-33 146.0 91 75.8
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 5.9e-33 144.8 88 79.5
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 1.0e-32 144.1 130 58.5
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 2.2e-32 142.9 202 43.6
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 3.8e-32 142.1 121 62.0
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 5.5e-31 138.3 159 45.3
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 2.7e-30 136.0 140 57.1
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 1.0e-29 134.0 87 72.4
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 1.4e-29 133.7 130 56.2
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 1.2e-28 130.6 134 58.2
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 1.5e-28 130.2 128 60.2
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 3.4e-28 129.0 126 57.1
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 1.3e-27 127.1 118 58.5
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.1e-26 124.0 75 84.0
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 5.4e-26 121.7 132 46.2
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 7.0e-26 121.3 134 51.5
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 1.2e-25 120.6 87 71.3
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 2.5e-23 112.8 75 76.0
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 5.5e-23 111.7 148 39.2
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 5.2e-21 105.1 118 50.0
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 6.8e-21 104.8 118 49.2
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 8.8e-21 104.4 113 50.4
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 2.6e-20 102.8 102 55.9
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 2.2e-19 99.8 97 54.6
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 2.3e-16 89.7 61 73.8
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 2.9e-16 89.4 155 30.3
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.2e-14 84.0 49 83.7
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.6e-14 82.4 66 60.6
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 6.4e-11 71.6 49 67.3
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 1.6e-09 67.0 61 47.5


User provided reference genes

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