Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 2.6e-62 241.9 124 100.0
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-25 120.2 79 83.5
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-25 120.2 79 83.5
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 7.5e-25 117.5 79 81.0
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 9.7e-25 117.1 79 79.7
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 9.7e-25 117.1 79 79.7
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 2.8e-24 115.5 79 78.5
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 4.8e-24 114.8 79 79.7
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 1.4e-23 113.2 79 78.5
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.4e-23 112.5 57 91.2
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 4.1e-23 111.7 79 77.2
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 5.3e-23 111.3 92 70.7
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 5.3e-23 111.3 79 77.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 9.1e-23 110.5 57 87.7
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 9.1e-23 110.5 97 67.0
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 2.0e-22 109.4 79 75.9
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 7.7e-22 107.5 57 86.0
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.0e-21 107.1 91 68.1
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 3.8e-21 105.1 79 70.9
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 5.0e-21 104.8 89 66.3
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 6.5e-21 104.4 92 65.2
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 8.5e-21 104.0 82 72.0
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.1e-20 103.6 82 70.7
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.1e-20 103.6 96 61.5
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 1.5e-20 103.2 79 73.4
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 2.5e-20 102.4 79 70.9
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 2.5e-20 102.4 79 69.6
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 3.2e-20 102.1 79 70.9
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 4.2e-20 101.7 92 64.1
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 4.2e-20 101.7 79 72.2
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 4.2e-20 101.7 92 65.2
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 5.5e-20 101.3 79 68.4
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 7.2e-20 100.9 92 65.2
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 7.2e-20 100.9 79 70.9
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 9.4e-20 100.5 82 68.3
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 9.4e-20 100.5 79 69.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 9.4e-20 100.5 92 63.0
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 9.4e-20 100.5 79 70.9
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 1.2e-19 100.1 92 65.2
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.2e-19 100.1 77 70.1
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 1.2e-19 100.1 76 72.4
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.6e-19 99.8 89 65.2
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 2.1e-19 99.4 89 64.0
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.7e-19 99.0 77 68.8
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.7e-19 99.0 77 68.8
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.7e-19 99.0 77 68.8
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.7e-19 99.0 77 68.8
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.6e-19 98.6 92 62.0
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 4.7e-19 98.2 62 82.3
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 8.0e-19 97.4 79 67.1
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 8.0e-19 97.4 91 63.7
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.0e-18 97.1 92 62.0
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-18 96.7 79 67.1
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 1.4e-18 96.7 79 67.1
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.4e-18 96.7 79 67.1
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.4e-18 96.7 89 61.8
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.4e-18 96.7 62 80.6
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.3e-18 95.9 66 75.8
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.3e-18 95.9 66 75.8
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 3.0e-18 95.5 79 67.1
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 5.2e-18 94.7 76 68.4
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 6.8e-18 94.4 92 62.0
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 6.8e-18 94.4 79 65.8
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.5e-17 93.2 89 60.7
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.6e-17 92.4 96 59.4
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 3.4e-17 92.0 79 62.0
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 3.4e-17 92.0 79 64.6
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.4e-17 91.7 96 60.4
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 5.7e-17 91.3 89 58.4
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 5.7e-17 91.3 63 76.2
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 1.3e-16 90.1 89 58.4
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.7e-16 89.7 69 69.6
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 2.2e-16 89.4 79 60.8
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 2.8e-16 89.0 79 64.6
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 3.7e-16 88.6 51 92.2
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 6.3e-16 87.8 89 56.2
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 6.3e-16 87.8 89 56.2
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 6.3e-16 87.8 89 56.2
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 6.3e-16 87.8 89 56.2
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 6.3e-16 87.8 89 56.2
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 6.3e-16 87.8 89 55.1
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 8.3e-16 87.4 93 58.1
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 1.4e-15 86.7 89 53.9
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 1.4e-15 86.7 89 53.9
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 1.4e-15 86.7 89 55.1
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 1.4e-15 86.7 79 63.3
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 2.4e-15 85.9 62 75.8
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.1e-15 85.1 109 51.4
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 9.1e-15 84.0 79 58.2
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 9.1e-15 84.0 76 64.5
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 1.6e-14 83.2 87 55.2
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.0e-14 82.8 78 62.8
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 2.0e-14 82.8 78 62.8
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.7e-14 82.4 96 49.0
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 3.5e-14 82.0 96 49.0
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 4.5e-14 81.6 78 61.5
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 4.5e-14 81.6 79 62.0
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 5.9e-14 81.3 52 80.8
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 1.3e-13 80.1 79 59.5
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.9e-13 79.0 52 76.9
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.2e-12 75.5 77 54.5
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 7.2e-12 74.3 117 43.6
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 4.7e-11 71.6 76 56.6
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 1.0e-10 70.5 67 58.2
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.4e-10 70.1 50 82.0
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 6.8e-10 67.8 38 89.5
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.2e-09 67.0 77 53.2
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 1.5e-09 66.6 76 55.3
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.3e-08 63.5 77 49.4
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 1.7e-08 63.2 57 50.9
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 3.7e-08 62.0 104 42.3
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.8e-07 59.7 56 50.0
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 2.4e-07 59.3 54 48.1
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 3.1e-07 58.9 52 53.8
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 4.1e-07 58.5 55 52.7
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 4.1e-07 58.5 52 55.8
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 4.1e-07 58.5 49 61.2
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 5.4e-07 58.2 60 55.0
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 1.2e-06 57.0 39 74.4
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.2e-06 57.0 55 54.5
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.2e-06 57.0 56 48.2
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 1.6e-06 56.6 56 48.2
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.7e-06 55.8 89 40.4
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.5e-06 55.5 55 50.9
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 3.5e-06 55.5 49 55.1
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 5.9e-06 54.7 54 50.0
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 5.9e-06 54.7 52 53.8
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 5.9e-06 54.7 59 52.5
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 5.9e-06 54.7 49 53.1
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 5.9e-06 54.7 55 52.7
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 7.7e-06 54.3 55 52.7
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 7.7e-06 54.3 55 49.1
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 7.7e-06 54.3 55 52.7


User provided reference genes

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