Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.1e-98 363.2 178 100.0
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.9e-94 347.8 170 100.0
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.3e-75 285.8 170 81.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.5e-74 283.1 170 80.6
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 4.3e-74 281.6 170 78.8
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.1e-73 279.3 170 77.1
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 2.6e-71 272.3 170 74.7
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 4.4e-71 271.6 170 74.1
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 5.8e-71 271.2 170 75.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.3e-70 270.0 170 73.5
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.2e-70 269.2 170 73.5
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 6.4e-70 267.7 170 74.1
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.9e-69 266.2 170 71.8
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.2e-69 265.4 170 71.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 4.1e-69 265.0 170 72.4
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.1e-69 265.0 170 70.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 7.1e-69 264.2 170 72.9
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 9.2e-69 263.8 170 72.4
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.2e-68 263.5 170 70.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.6e-68 263.1 170 72.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.6e-68 263.1 170 72.4
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.7e-68 262.3 170 72.4
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.3e-67 260.0 170 69.4
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.7e-67 259.6 170 70.6
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.3e-67 259.2 170 71.8
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.3e-67 259.2 170 71.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.0e-67 258.8 168 70.8
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 6.6e-67 257.7 170 71.2
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 6.6e-67 257.7 170 69.4
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 8.6e-67 257.3 170 68.8
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 8.6e-67 257.3 170 70.0
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.5e-66 256.5 170 68.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.5e-66 256.5 168 70.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.5e-66 256.5 170 69.4
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.9e-66 256.1 170 68.2
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.9e-66 256.1 170 69.4
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 2.5e-66 255.8 170 68.2
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 2.5e-66 255.8 170 69.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 3.3e-66 255.4 170 67.1
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 4.3e-66 255.0 170 68.2
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 5.6e-66 254.6 170 67.6
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 7.3e-66 254.2 170 68.2
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 9.6e-66 253.8 170 68.2
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 9.6e-66 253.8 170 67.1
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.2e-65 253.4 170 67.6
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.2e-65 253.4 170 67.1
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.6e-65 253.1 170 67.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.8e-65 252.3 170 67.1
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.6e-65 251.9 170 67.6
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 4.7e-65 251.5 175 64.6
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 4.7e-65 251.5 170 67.1
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 4.7e-65 251.5 170 67.6
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 6.2e-65 251.1 170 68.8
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 8.1e-65 250.8 168 66.7
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.1e-64 250.4 170 64.7
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.1e-64 250.4 170 67.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-64 250.4 170 67.6
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-64 250.4 170 67.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.1e-64 250.4 168 67.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.1e-64 250.4 170 67.6
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.1e-64 250.4 168 66.7
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.8e-64 249.6 194 62.9
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.8e-64 249.6 170 67.6
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.4e-64 249.2 168 67.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.4e-64 249.2 170 67.6
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 2.4e-64 249.2 170 67.1
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.4e-64 249.2 168 66.1
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 4.0e-64 248.4 170 65.9
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.2e-64 248.1 170 65.9
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.2e-64 248.1 170 65.9
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 6.9e-64 247.7 170 65.9
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 6.9e-64 247.7 170 65.9
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 6.9e-64 247.7 170 65.9
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.5e-63 246.5 170 64.7
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.0e-63 246.1 170 66.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.6e-63 245.7 170 64.1
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.6e-63 245.7 170 67.1
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.4e-63 245.4 170 62.9
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.6e-63 244.2 170 65.9
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 3.8e-62 241.9 170 65.3
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 4.9e-62 241.5 170 65.3
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 6.4e-62 241.1 170 63.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.9e-61 239.6 170 62.4
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.0e-59 233.8 163 69.3
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.0e-59 232.3 168 62.5
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 6.6e-59 231.1 151 72.2
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.1e-58 230.3 151 70.2
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.9e-58 229.6 168 61.9
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 8.1e-57 224.2 165 60.6
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.4e-56 223.4 152 67.8
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.4e-56 223.4 170 63.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 5.3e-56 221.5 150 71.3
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 5.8e-55 218.0 169 58.0
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.1e-53 213.8 157 61.1
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.6e-52 209.9 169 55.6
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.9e-50 203.0 152 60.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.5e-50 202.6 151 64.2
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 9.0e-48 194.1 168 54.8
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.2e-47 193.7 125 72.8
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 7.6e-47 191.0 129 68.2
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.1e-45 187.2 124 66.9
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.9e-45 186.4 124 68.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.5e-44 182.2 122 69.7
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.8e-43 179.9 151 51.7
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.3e-42 175.6 151 58.3
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 4.3e-42 175.3 152 55.3
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.1e-41 172.9 133 60.9
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 2.3e-35 152.9 149 49.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.3e-33 147.1 170 44.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 8.2e-33 144.4 168 41.1
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 2.6e-31 139.4 169 40.2
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 7.6e-31 137.9 168 39.3
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-27 125.9 95 58.9
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 5.7e-26 121.7 75 74.7
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 4.8e-25 118.6 76 69.7
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 4.5e-23 112.1 76 67.1
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.1e-21 107.5 76 63.2
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.9e-21 106.7 83 55.4
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.3e-17 94.0 96 47.9
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.7e-12 75.5 41 80.5
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 3.9e-11 72.4 45 66.7
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.7e-10 68.6 44 68.2
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.3e-09 67.4 54 51.9


User provided reference genes

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