Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 3878.6 1969 100.0
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 3826.6 1969 98.8
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 3326.2 1952 86.2
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 3305.0 1952 85.3
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 3300.8 1951 85.4
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 3245.7 1952 84.7
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 3195.6 1957 83.4
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 3193.3 1954 83.7
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 3177.5 1958 83.3
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 3151.3 1959 82.6
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 3089.7 1961 81.3
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2759.9 1989 72.6
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2759.2 1984 72.6
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2750.3 2006 72.0
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2674.4 2117 67.9
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2662.1 2029 69.1
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2657.1 1987 69.7
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2649.8 2017 69.2
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2648.6 1983 69.7
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2634.8 1982 69.6
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2610.5 1993 68.5
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2606.6 1978 69.7
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2598.5 1977 69.7
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2584.3 1986 68.4
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2580.1 1999 67.7
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2574.3 1977 68.8
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2573.9 1982 68.6
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2563.9 1976 68.6
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2541.9 1980 67.3
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2539.2 1992 67.9
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2534.2 1986 67.0
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2498.4 1985 66.9
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2489.5 1998 66.0
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2486.8 1978 67.0
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 2481.4 1982 67.1
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 2481.1 1983 65.8
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 2478.4 1989 66.9
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2478.0 2023 66.0
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2474.9 2095 63.8
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2473.0 1985 67.3
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2463.0 2053 64.8
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 2453.7 1979 66.4
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2431.0 1977 66.3
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2377.4 1832 68.1
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 2367.8 2103 61.8
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2358.2 1995 64.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2340.5 1994 62.5
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 2297.3 1997 62.3
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 2293.5 2056 61.4
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 2287.3 2001 62.0
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 2283.4 2066 60.9
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2277.7 1991 62.4
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2275.0 1969 62.8
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 2271.1 1988 62.1
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 2249.2 2005 60.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2247.2 1996 60.4
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 2238.4 1990 61.6
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 2233.4 1973 61.7
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 2231.1 2053 59.4
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 2228.4 1975 61.5
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 2228.0 1972 61.5
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2223.0 1973 60.0
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 2216.0 1975 61.4
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 2214.5 1977 61.4
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2211.8 1665 69.4
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 2211.0 1978 61.1
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 2191.8 1999 59.5
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2176.4 1993 58.5
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 2171.4 1988 60.1
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2163.7 1976 60.5
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 2160.6 1981 60.4
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2154.8 1976 60.2
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2149.4 1999 59.8
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 2143.6 1968 59.3
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2138.6 1961 60.0
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 2137.5 1982 57.2
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2137.1 2007 59.4
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 2133.2 1990 59.7
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 2131.7 1980 59.6
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 2129.4 1998 59.2
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 2117.0 1961 59.3
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 2055.8 2148 55.8
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 2047.3 2001 58.3
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 2047.3 1994 57.7
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 2038.5 1874 59.5
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 2028.4 1225 82.7
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 2026.1 1905 59.1
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1981.5 1967 56.9
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1944.9 1787 59.2
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1859.7 1411 69.4
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1850.1 2029 52.3
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1826.6 1674 59.1
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1787.7 1690 58.3
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1680.2 1724 56.4
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1667.1 1489 59.8
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1620.5 1363 63.7
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1595.5 1996 48.5
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1461.0 1985 45.7
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 1389.8 1183 63.2
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1380.2 1902 44.6
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1267.7 1591 46.0
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1259.2 1179 59.5
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1177.9 1416 48.4
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 0.0e+00 1086.6 771 73.3
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 0.0e+00 1084.3 773 72.8
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 6.8e-298 1028.5 772 69.9
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 6.9e-274 948.7 833 59.3
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.4e-268 928.7 979 52.4
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 3.4e-265 919.8 2123 33.7
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.1e-261 906.0 1039 50.4
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.5e-257 894.4 1196 45.0
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.1e-244 851.7 2134 32.8
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.7e-238 830.5 1288 42.6
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 7.8e-209 732.6 1961 32.8
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 3.7e-195 687.2 1040 42.6
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 7.6e-180 636.3 1926 30.2
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.9e-175 621.7 656 55.2
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 1.7e-171 608.6 377 85.9
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 6.4e-171 606.7 1600 31.8
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 2.1e-169 601.7 540 60.9
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 4.6e-169 600.5 428 69.9
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.2e-164 585.9 581 53.2
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 6.5e-131 473.8 320 73.1
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.4e-128 466.1 508 53.7
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.6e-116 426.0 529 47.1
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-113 416.4 319 68.7
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.1e-113 415.6 780 38.8
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.0e-99 370.2 360 55.0
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.8e-97 362.1 421 49.9
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 1.4e-96 359.8 193 92.7
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 5.4e-93 347.8 334 59.3
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 3.6e-89 335.1 387 56.3
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 5.8e-87 327.8 283 61.5
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.9e-85 322.8 214 75.2
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.2e-84 320.1 232 72.4
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 6.6e-83 314.3 221 71.9
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 9.9e-71 273.9 308 49.4
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 8.4e-70 270.8 160 83.1
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-66 257.7 1103 26.5
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 2.8e-65 255.8 158 80.4
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.3e-62 246.9 423 40.0
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 6.4e-62 244.6 159 76.1
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 9.3e-61 240.7 211 60.7
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 5.6e-58 231.5 264 48.1
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.2e-52 213.8 293 47.4
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.5e-52 212.2 164 65.2
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 4.5e-47 195.3 240 49.2
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 4.5e-47 195.3 603 31.2
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.1e-45 188.0 127 67.7
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.2e-39 170.6 328 36.6
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 2.3e-35 156.4 130 66.9
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 2.4e-32 146.4 462 34.6
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.1e-29 137.5 99 68.7
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 2.0e-26 126.7 68 77.9
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 2.5e-26 126.3 112 69.6
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 2.5e-26 126.3 112 69.6
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 3.7e-25 122.5 109 60.6
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.8e-24 120.2 98 75.5
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 1.5e-23 117.1 135 59.3
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.0e-22 112.1 131 50.4
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.9e-21 110.2 149 46.3
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 1.3e-17 97.4 68 64.7
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 1.8e-16 93.6 67 71.6
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.5e-15 90.5 115 47.0
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 2.0e-15 90.1 141 45.4
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 4.5e-15 89.0 110 45.5
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 3.2e-13 82.8 44 79.5
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 3.2e-13 82.8 44 79.5
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.4e-11 77.4 151 37.1
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 2.2e-06 60.1 109 41.3
Cre02.g080300 Chlamydomonas reinhardtii HOM05D000764 ORTHO05D004953 2.2e-06 60.1 76 36.8
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 5.0e-06 58.9 36 77.8
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 6.5e-06 58.5 90 37.8


User provided reference genes

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