Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 1.1e-63 246.5 133 100.0
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.8e-37 159.5 127 71.7
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.3e-35 153.3 139 62.6
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 1.3e-35 153.3 138 63.0
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.7e-35 152.9 129 69.8
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 3.8e-35 151.8 135 65.2
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.1e-34 150.2 136 63.2
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.1e-34 150.2 136 63.2
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.1e-34 150.2 127 67.7
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 3.2e-34 148.7 136 63.2
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 3.2e-34 148.7 127 66.9
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 4.2e-34 148.3 123 66.7
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 4.2e-34 148.3 137 61.3
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.2e-34 148.3 127 66.9
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 7.2e-34 147.5 140 61.4
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 9.4e-34 147.1 133 62.4
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 1.6e-33 146.4 136 61.8
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 1.6e-33 146.4 136 61.8
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 2.7e-33 145.6 135 62.2
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 4.7e-33 144.8 144 59.0
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 6.1e-33 144.4 142 60.6
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 1.8e-32 142.9 136 61.0
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 4.0e-32 141.7 127 63.8
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 5.2e-32 141.4 129 64.3
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 6.8e-32 141.0 127 62.2
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 1.2e-31 140.2 127 62.2
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-31 139.8 136 58.1
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-31 139.8 141 56.0
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.0e-31 139.4 124 66.1
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 2.6e-31 139.0 133 60.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 4.4e-31 138.3 140 57.1
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.4e-31 138.3 124 66.1
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 4.4e-31 138.3 135 60.7
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-30 136.7 127 63.0
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-30 136.7 127 63.0
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-30 136.7 127 63.0
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 2.8e-30 135.6 133 59.4
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 4.8e-30 134.8 141 60.3
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 6.3e-30 134.4 127 61.4
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.4e-29 133.3 127 63.0
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.8e-29 132.9 142 54.9
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.4e-29 132.5 110 67.3
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 5.3e-29 131.3 128 61.7
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 1.6e-28 129.8 126 60.3
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.0e-28 129.4 115 65.2
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 2.0e-28 129.4 111 65.8
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 3.5e-28 128.6 116 63.8
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 3.8e-27 125.2 116 62.9
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 3.8e-27 125.2 116 62.9
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 3.8e-27 125.2 116 62.9
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 6.5e-27 124.4 98 67.3
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 1.5e-26 123.2 98 73.5
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.5e-26 123.2 115 62.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.5e-26 123.2 115 61.7
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 2.5e-26 122.5 125 56.0
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-25 119.8 94 70.2
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.6e-25 118.6 110 63.6
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.0e-24 117.1 145 51.7
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 1.4e-24 116.7 93 65.6
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.4e-24 116.7 90 71.1
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 3.0e-24 115.5 92 65.2
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-23 112.1 103 64.1
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-23 112.1 103 64.1
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-23 112.1 103 64.1
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-23 112.1 102 64.7
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-23 112.1 103 64.1
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 3.4e-23 112.1 103 64.1
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 6.3e-22 107.8 123 56.1
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-21 106.3 80 73.8
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.6e-20 103.2 95 65.3
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.6e-20 103.2 95 65.3
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.5e-18 96.7 117 53.0
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.5e-18 95.9 133 47.4
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.5e-18 95.9 133 47.4
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 3.6e-17 92.0 97 59.8
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.3e-16 89.4 71 73.2
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 5.2e-16 88.2 73 65.8
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 5.7e-15 84.7 78 62.8
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 1.7e-14 83.2 83 57.8
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.3e-14 81.3 75 61.3
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.0e-12 76.3 77 61.0
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 3.5e-12 75.5 50 70.0
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.5e-12 75.1 83 53.0
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 5.9e-12 74.7 76 60.5
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 2.9e-11 72.4 61 63.9
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 2.9e-11 72.4 74 58.1
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 3.9e-11 72.0 61 65.6
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.0e-11 71.6 86 55.8
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.1e-10 70.5 90 47.8
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 7.3e-10 67.8 84 47.6
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 9.5e-10 67.4 67 58.2
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 2.1e-09 66.2 75 54.7
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.6e-09 65.5 70 57.1
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 3.6e-09 65.5 57 64.9
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.7e-09 65.1 68 60.3
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 8.0e-09 64.3 55 63.6
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.4e-08 63.5 82 46.3
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.3e-08 62.8 65 60.0
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.3e-08 62.8 68 58.8
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 5.2e-08 61.6 53 66.0
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 2.6e-07 59.3 53 62.3
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 5.8e-07 58.2 57 50.9
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 9.8e-07 57.4 61 57.4


User provided reference genes

Program Settings