Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MF78WR Arachis hypogaea HOM05D000778 ORTHO05D000601 1.1e-181 640.2 400 100.0
arahy.Tifrunner.gnm1.ann1.HKB63Q Arachis hypogaea HOM05D000778 ORTHO05D000601 3.8e-179 631.7 400 98.8
Glyma.19G201500 Glycine max HOM05D000778 ORTHO05D000601 4.6e-68 262.7 453 46.8
Lalb_Chr25g0287891 Lupinus albus HOM05D000778 ORTHO05D000601 3.0e-67 260.0 488 45.7
Lj1g0026823 Lotus japonicus HOM05D000778 ORTHO05D000601 1.2e-63 248.1 435 50.1
Glyma.10G084200 Glycine max HOM05D000778 ORTHO05D000601 3.0e-59 233.4 469 45.4
Phvul.001G197800 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 1.3e-57 228.0 448 44.6
TPR.G34436 Trifolium pratense HOM05D000778 ORTHO05D000601 9.0e-56 221.9 461 44.7
VMungo0720G0778 Vigna mungo HOM05D000778 ORTHO05D000601 7.7e-55 218.8 470 42.3
Medtr7g106750 Medicago truncatula HOM05D000778 ORTHO05D000601 8.5e-54 215.3 445 44.5
Phvul.007G266000 Phaseolus vulgaris HOM05D000778 ORTHO05D000601 7.2e-53 212.2 468 42.5
Glyma.02G192600 Glycine max HOM05D000778 ORTHO05D000601 2.1e-52 210.7 460 42.8
Glyma.03G204200 Glycine max HOM05D000778 ORTHO05D000601 3.0e-51 206.8 345 49.3
VMungo1383G2391 Vigna mungo HOM05D000778 ORTHO05D000601 3.1e-48 196.8 434 40.1
Lalb_Chr20g0111241 Lupinus albus HOM05D000778 ORTHO05D000601 1.5e-42 177.9 463 40.2
Lj5g0005651 Lotus japonicus HOM05D000778 ORTHO05D000601 3.3e-42 176.8 446 38.1
Ca_11666_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 2.8e-41 173.7 415 41.4
Medtr1g055085 Medicago truncatula HOM05D000778 ORTHO05D000601 1.8e-40 171.0 463 37.1
Cfa020080 Carpinus fangiana HOM05D000778 ORTHO05D000601 3.0e-35 153.7 508 34.4
TPR.G21246 Trifolium pratense HOM05D000778 ORTHO05D000601 8.8e-35 152.1 485 39.4
Psat3g028040 Pisum sativum HOM05D000778 ORTHO05D000601 7.5e-34 149.1 439 38.3
Haze_20112 Corylus avellana HOM05D000778 ORTHO05D000601 5.5e-29 132.9 495 33.7
FAN14G3360 Fragaria x ananassa HOM05D000778 ORTHO05D000601 2.1e-28 131.0 364 37.9
Duzib128G1870 Durio zibethinus HOM05D000778 ORTHO05D000601 3.6e-28 130.2 490 32.4
Dinv11888 Davidia involucrata HOM05D000778 ORTHO05D000601 4.7e-28 129.8 462 33.5
FvH4_6g20850 Fragaria vesca HOM05D000778 ORTHO05D000601 6.1e-28 129.4 364 37.6
MD14G1043400 Malus domestica HOM05D000778 ORTHO05D000601 8.0e-28 129.0 484 34.1
MD12G1044500 Malus domestica HOM05D000778 ORTHO05D000601 6.8e-27 125.9 490 34.1
Manes.08G036400 Manihot esculenta HOM05D000778 ORTHO05D000601 8.8e-27 125.6 370 36.8
RcHm_v2.0_Chr3g0477191 Rosa chinensis HOM05D000778 ORTHO05D000601 8.8e-27 125.6 362 38.1
Cpa.g.sc222.23 Carica papaya HOM05D000778 ORTHO05D000601 2.6e-26 124.0 372 34.9
FAN05G1121 Fragaria x ananassa HOM05D000778 ORTHO05D000601 7.5e-26 122.5 364 36.5
QL07p026771 Quercus lobata HOM05D000778 ORTHO05D000601 7.5e-26 122.5 514 32.7
TWI53G1056 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 1.3e-25 121.7 494 32.2
TAR623G1775 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.3e-25 121.7 492 31.9
CiPaw.09G023300 Carya illinoinensis HOM05D000778 ORTHO05D000601 2.2e-25 120.9 352 37.2
FAN05G2927 Fragaria x ananassa HOM05D000778 ORTHO05D000601 3.7e-25 120.2 364 36.3
Manes.09G042700 Manihot esculenta HOM05D000778 ORTHO05D000601 3.7e-25 120.2 486 31.7
TWI74G0228 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 6.3e-25 119.4 497 32.8
Atru.chr8.1297 Acer truncatum HOM05D000778 ORTHO05D000601 8.3e-25 119.0 362 35.6
FAN09G3334 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.4e-24 118.2 491 32.4
Thecc.05G108900 Theobroma cacao HOM05D000778 ORTHO05D000601 5.4e-24 116.3 492 30.5
Lj3g0016584 Lotus japonicus HOM05D000778 ORTHO05D000601 1.6e-23 114.8 309 38.2
Ciclev10012108m.g Citrus clementina HOM05D000778 ORTHO05D000601 5.9e-23 112.8 454 30.8
CSS0044259 Camellia sinensis var. sinensis HOM05D000778 ORTHO05D000601 1.0e-22 112.1 455 31.6
MELO3C009566.2 Cucumis melo HOM05D000778 ORTHO05D000601 1.0e-22 112.1 322 37.6
MSTRG.5916 Avicennia marina HOM05D000778 ORTHO05D000601 5.0e-22 109.8 340 36.8
Gohir.A01G199900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 5.0e-22 109.8 481 30.6
PSO384G4839 Papaver somniferum HOM05D000778 ORTHO05D000601 5.0e-22 109.8 419 32.0
MBI05_g28095_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 6.5e-22 109.4 367 33.2
COL.COLO4_29512 Corchorus olitorius HOM05D000778 ORTHO05D000601 8.5e-22 109.0 483 34.6
Aqoxy1G00588 Aquilegia oxysepala HOM05D000778 ORTHO05D000601 1.1e-21 108.6 486 29.8
Gorai.002G233700 Gossypium raimondii HOM05D000778 ORTHO05D000601 1.5e-21 108.2 349 34.4
Prupe.7G090700 Prunus persica HOM05D000778 ORTHO05D000601 2.5e-21 107.5 489 32.3
CANSAT64G0079 Cannabis sativa HOM05D000778 ORTHO05D000601 3.2e-21 107.1 425 32.0
PSO339G2773 Papaver somniferum HOM05D000778 ORTHO05D000601 3.2e-21 107.1 425 31.1
Sed0001287 Sechium edule HOM05D000778 ORTHO05D000601 3.2e-21 107.1 339 33.6
Sed0026206 Sechium edule HOM05D000778 ORTHO05D000601 3.2e-21 107.1 364 34.9
Nn6g34603 Nelumbo nucifera HOM05D000778 ORTHO05D000601 5.5e-21 106.3 307 37.8
arahy.Tifrunner.gnm1.ann1.XC2T0Q Arachis hypogaea HOM05D000778 ORTHO05D000601 7.2e-21 105.9 459 33.3
ClCG10G018060 Citrullus lanatus HOM05D000778 ORTHO05D000601 1.2e-20 105.1 319 35.4
Psat6g118600 Pisum sativum HOM05D000778 ORTHO05D000601 1.6e-20 104.8 241 41.5
FAN02G0507 Fragaria x ananassa HOM05D000778 ORTHO05D000601 2.1e-20 104.4 494 31.8
Duzib093G1343 Durio zibethinus HOM05D000778 ORTHO05D000601 4.7e-20 103.2 486 30.0
Hma1.2p1_0969F.1_g242590 Hydrangea macrophylla HOM05D000778 ORTHO05D000601 4.7e-20 103.2 493 30.4
Nitab4.5_0000721g0190 Nicotiana tabacum HOM05D000778 ORTHO05D000601 4.7e-20 103.2 403 30.3
CsaV3_3G038240 Cucumis sativus L. HOM05D000778 ORTHO05D000601 6.1e-20 102.8 322 36.0
CiPaw.10G019900 Carya illinoinensis HOM05D000778 ORTHO05D000601 1.0e-19 102.1 492 33.5
vmacro07492 Vaccinium macrocarpon HOM05D000778 ORTHO05D000601 2.3e-19 100.9 466 30.7
Duzib106G2033 Durio zibethinus HOM05D000778 ORTHO05D000601 6.8e-19 99.4 370 34.3
Gohir.D01G189900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 8.8e-19 99.0 479 30.3
Sopen01g002820 Solanum pennellii HOM05D000778 ORTHO05D000601 1.2e-18 98.6 358 35.5
Actinidia37771 Actinidia chinensis HOM05D000778 ORTHO05D000601 2.6e-18 97.4 457 30.6
Nitab4.5_0010873g0010 Nicotiana tabacum HOM05D000778 ORTHO05D000601 2.6e-18 97.4 353 36.5
Solyc01g006830.3 Solanum lycopersicum HOM05D000778 ORTHO05D000601 3.4e-18 97.1 358 35.2
PGSC0003DMG400021339 Solanum tuberosum HOM05D000778 ORTHO05D000601 3.4e-18 97.1 358 35.2
Oeu044681.1 Olea europaea HOM05D000778 ORTHO05D000601 4.4e-18 96.7 443 30.5
SalBow1G6066 Salvia bowleyana HOM05D000778 ORTHO05D000601 4.4e-18 96.7 333 31.8
Actinidia07950 Actinidia chinensis HOM05D000778 ORTHO05D000601 7.5e-18 95.9 403 31.3
Rhsim03G0062900 Rhododendron simsii HOM05D000778 ORTHO05D000601 1.3e-17 95.1 473 29.0
ECA238G1457 Erigeron canadensis HOM05D000778 ORTHO05D000601 3.7e-17 93.6 324 33.3
Oeu058124.1 Olea europaea HOM05D000778 ORTHO05D000601 1.1e-16 92.0 451 32.2
Ca_04605_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 1.8e-16 91.3 249 41.4
Nn2g14388 Nelumbo nucifera HOM05D000778 ORTHO05D000601 5.4e-16 89.7 345 33.3
Carub.0004s1763 Capsella rubella HOM05D000778 ORTHO05D000601 1.2e-15 88.6 291 36.1
CAN.G911.9 Capsicum annuum HOM05D000778 ORTHO05D000601 1.2e-15 88.6 353 34.0
SGA_v2.0_scaffold392G50679 Striga asiatica HOM05D000778 ORTHO05D000601 1.6e-15 88.2 323 33.7
CARHR130130 Cardamine hirsuta HOM05D000778 ORTHO05D000601 2.0e-15 87.8 323 34.1
Nitab4.5_0000220g0130 Nicotiana tabacum HOM05D000778 ORTHO05D000601 2.0e-15 87.8 259 37.8
Potri.016G066600 Populus trichocarpa HOM05D000778 ORTHO05D000601 3.5e-15 87.0 499 29.1
Cc06_g06890 Coffea canephora HOM05D000778 ORTHO05D000601 5.9e-15 86.3 458 28.6
Migut.J00737 Erythranthe guttata HOM05D000778 ORTHO05D000601 5.9e-15 86.3 423 30.0
Lsat_1_v5_gn_2_101800 Lactuca sativa HOM05D000778 ORTHO05D000601 1.0e-14 85.5 313 31.6
Potri.006G200400 Populus trichocarpa HOM05D000778 ORTHO05D000601 1.0e-14 85.5 497 29.6
BcaB02g09392 Brassica carinata HOM05D000778 ORTHO05D000601 2.9e-14 84.0 292 35.3
ECA248G0938 Erigeron canadensis HOM05D000778 ORTHO05D000601 3.8e-14 83.6 305 33.4
TAR369G0692 Trochodendron aralioides HOM05D000778 ORTHO05D000601 3.8e-14 83.6 253 36.0
Aa31LG5G21020 Aethionema arabicum HOM05D000778 ORTHO05D000601 5.0e-14 83.2 339 31.6
Sabra06G0154300 Salix brachista HOM05D000778 ORTHO05D000601 6.6e-14 82.8 282 35.1
THA.LOC104815201 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 6.6e-14 82.8 389 32.6
CAN.G674.21 Capsicum annuum HOM05D000778 ORTHO05D000601 1.5e-13 81.6 357 30.8
BcaB01g03873 Brassica carinata HOM05D000778 ORTHO05D000601 1.9e-13 81.3 277 37.5
DCAR_013455 Daucus carota HOM05D000778 ORTHO05D000601 4.3e-13 80.1 393 30.3
Peaxi162Scf00203g00812 Petunia axillaris HOM05D000778 ORTHO05D000601 4.3e-13 80.1 430 30.2
C03p23090 Brassica napus HOM05D000778 ORTHO05D000601 7.3e-13 79.3 285 34.7
BraA03t11232Z Brassica rapa HOM05D000778 ORTHO05D000601 9.5e-13 79.0 270 34.8
MSTRG.10417 Avicennia marina HOM05D000778 ORTHO05D000601 1.2e-12 78.6 369 33.1
MSTRG.26585 Avicennia marina HOM05D000778 ORTHO05D000601 1.2e-12 78.6 364 29.7
Nitab4.5_0001918g0080 Nicotiana tabacum HOM05D000778 ORTHO05D000601 1.6e-12 78.2 424 29.2
ATR0697G012 Amborella trichopoda HOM05D000778 ORTHO05D000601 2.1e-12 77.8 468 29.1
BcaC01g05696 Brassica carinata HOM05D000778 ORTHO05D000601 2.1e-12 77.8 285 34.7
Sabra16G0068000 Salix brachista HOM05D000778 ORTHO05D000601 2.1e-12 77.8 486 28.8
Hund14988 Selenicereus undatus HOM05D000778 ORTHO05D000601 2.1e-12 77.8 444 26.1
DCAR_016912 Daucus carota HOM05D000778 ORTHO05D000601 2.8e-12 77.4 327 31.5
unitig_749.g14210 Utricularia gibba HOM05D000778 ORTHO05D000601 2.8e-12 77.4 333 30.3
THA.LOC104803621 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 4.7e-12 76.6 415 31.1
unitig_26.g9154 Utricularia gibba HOM05D000778 ORTHO05D000601 4.7e-12 76.6 407 27.5
Peaxi162Scf00687g00057 Petunia axillaris HOM05D000778 ORTHO05D000601 1.0e-11 75.5 294 31.0
SGA_v2.0_scaffold41G15773 Striga asiatica HOM05D000778 ORTHO05D000601 1.0e-11 75.5 335 32.5
BcaC02g11700 Brassica carinata HOM05D000778 ORTHO05D000601 1.4e-11 75.1 343 33.2
C04p12180 Brassica napus HOM05D000778 ORTHO05D000601 1.4e-11 75.1 343 33.2
HanXRQChr14g0453281 Helianthus annuus HOM05D000778 ORTHO05D000601 1.8e-11 74.7 286 30.8
SGA_v2.0_scaffold31G12822 Striga asiatica HOM05D000778 ORTHO05D000601 1.8e-11 74.7 325 35.7
Zm00001eb114200 Zea mays HOM05D000778 ORTHO05D000601 3.0e-11 73.9 290 32.1
AT2G35880 Arabidopsis thaliana HOM05D000778 ORTHO05D000601 5.2e-11 73.2 293 34.1
A03p19800 Brassica napus HOM05D000778 ORTHO05D000601 5.2e-11 73.2 179 38.5
Os11g0571900 Oryza sativa ssp. japonica HOM05D000778 ORTHO05D000601 5.2e-11 73.2 228 34.2
BraA05t19934Z Brassica rapa HOM05D000778 ORTHO05D000601 6.8e-11 72.8 293 35.2
Zm00001eb200130 Zea mays HOM05D000778 ORTHO05D000601 6.8e-11 72.8 228 34.6
PGR004G2624 Punica granatum HOM05D000778 ORTHO05D000601 1.2e-10 72.0 409 32.3
Sopen10g032240 Solanum pennellii HOM05D000778 ORTHO05D000601 1.2e-10 72.0 353 30.9
BolC3t14711H Brassica oleracea HOM05D000778 ORTHO05D000601 1.5e-10 71.6 333 31.5
A05p09820 Brassica napus HOM05D000778 ORTHO05D000601 2.0e-10 71.2 297 34.0
Migut.L01849 Erythranthe guttata HOM05D000778 ORTHO05D000601 2.0e-10 71.2 337 31.8
Solyc10g081730.2 Solanum lycopersicum HOM05D000778 ORTHO05D000601 2.0e-10 71.2 353 30.9
EL10Ac5g11820 Beta vulgaris HOM05D000778 ORTHO05D000601 3.4e-10 70.5 360 28.1
PGSC0003DMG400028228 Solanum tuberosum HOM05D000778 ORTHO05D000601 5.7e-10 69.7 355 32.4
Ah.02g116100 Amaranthus hybridus HOM05D000778 ORTHO05D000601 1.7e-09 68.2 307 29.6
AL4G31980 Arabidopsis lyrata HOM05D000778 ORTHO05D000601 1.7e-09 68.2 296 32.4
SalBow5G4642 Salvia bowleyana HOM05D000778 ORTHO05D000601 2.2e-09 67.8 246 32.1
unitig_22.g5153 Utricularia gibba HOM05D000778 ORTHO05D000601 2.9e-09 67.4 82 48.8
HanXRQChr13g0398691 Helianthus annuus HOM05D000778 ORTHO05D000601 3.7e-09 67.0 114 39.5
HPP92_016657 Vanilla planifolia HOM05D000778 ORTHO05D000601 3.7e-09 67.0 225 33.8
Ca_13028_v3 Cicer arietinum L. HOM05D000778 ORTHO05D000601 6.4e-09 66.2 260 30.0
HanXRQChr07g0196611 Helianthus annuus HOM05D000778 ORTHO05D000601 8.3e-09 65.9 321 34.0
CDE04G1512 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 1.4e-08 65.1 324 29.6
arahy.Tifrunner.gnm1.ann1.E8ZNK7 Arachis hypogaea HOM05D000778 ORTHO05D000601 4.1e-08 63.5 164 39.0
Thhalv10016634m.g Eutrema salsugineum HOM05D000778 ORTHO05D000601 4.1e-08 63.5 363 31.1
BolC4t22862H Brassica oleracea HOM05D000778 ORTHO05D000601 2.0e-07 61.2 344 32.0
AUR62036333 Chenopodium quinoa HOM05D065301 ORTHO05D000601 2.0e-07 61.2 223 32.3
CsaV3_3G046420 Cucumis sativus L. HOM05D000778 ORTHO05D000601 2.0e-07 61.2 136 36.8
DCAR_009072 Daucus carota HOM05D000778 ORTHO05D000601 2.0e-07 61.2 346 31.8
CDE07G0965 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 2.7e-07 60.8 203 33.5
ECA233G1996 Erigeron canadensis HOM05D000778 ORTHO05D000601 3.5e-07 60.5 157 36.3
BcaB06g28887 Brassica carinata HOM05D000778 ORTHO05D000601 5.9e-07 59.7 160 36.2
HPP92_016638 Vanilla planifolia HOM05D000778 ORTHO05D000601 7.8e-07 59.3 341 29.6
Zm00001eb333920 Zea mays HOM05D000778 ORTHO05D000601 1.0e-06 58.9 181 35.9
DCAR_020683 Daucus carota HOM05D000778 ORTHO05D000601 1.3e-06 58.5 352 31.5
Gohir.D13G189300 Gossypium hirsutum HOM05D000778 ORTHO05D000601 1.3e-06 58.5 186 34.4
Gorai.013G214800 Gossypium raimondii HOM05D000778 ORTHO05D000601 1.3e-06 58.5 186 34.4
AUR62030689 Chenopodium quinoa HOM05D065301 ORTHO05D000601 2.3e-06 57.8 293 32.4
Sp4g18130 Schrenkiella parvula HOM05D000778 ORTHO05D000601 3.0e-06 57.4 326 31.3
Actinidia03969 Actinidia chinensis HOM05D000778 ORTHO05D000601 3.9e-06 57.0 235 31.1
Migut.A00044 Erythranthe guttata HOM05D000778 ORTHO05D000601 3.9e-06 57.0 134 35.8
PGR044G0050 Punica granatum HOM05D000778 ORTHO05D000601 3.9e-06 57.0 199 34.7
unitig_8.g4301 Utricularia gibba HOM05D000778 ORTHO05D000601 3.9e-06 57.0 96 43.8
ATR1120G030 Amborella trichopoda HOM05D000778 ORTHO05D000601 5.0e-06 56.6 340 27.4
Lj1g0022055 Lotus japonicus HOM05D000778 ORTHO05D000601 5.0e-06 56.6 226 31.0
Manes.03G014900 Manihot esculenta HOM05D000778 ORTHO05D000601 5.0e-06 56.6 225 31.1
Hund25807 Selenicereus undatus HOM05D000778 ORTHO05D000601 5.0e-06 56.6 204 31.9
HPP92_011042 Vanilla planifolia HOM05D000778 ORTHO05D000601 5.0e-06 56.6 337 28.5
CANSAT25G2802 Cannabis sativa HOM05D000778 ORTHO05D000601 6.6e-06 56.2 227 31.7
HanXRQChr02g0052901 Helianthus annuus HOM05D000778 ORTHO05D000601 6.6e-06 56.2 318 28.6
HanXRQChr13g0402941 Helianthus annuus HOM05D000778 ORTHO05D000601 6.6e-06 56.2 265 29.4
MSTRG.11618 Avicennia marina HOM05D000778 ORTHO05D000601 8.6e-06 55.8 127 39.4
Hund10830 Selenicereus undatus HOM05D000778 ORTHO05D000601 8.6e-06 55.8 450 26.9


User provided reference genes

Program Settings