Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 2.5e-178 628.6 317 100.0
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 2.0e-114 416.4 275 78.9
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 2.0e-114 416.4 275 78.9
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 3.6e-84 315.8 274 60.2
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 4.8e-84 315.5 274 60.6
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 5.8e-82 308.5 274 59.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 1.3e-81 307.4 274 59.1
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 6.0e-79 298.5 273 58.6
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 3.3e-77 292.7 276 55.8
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 1.1e-75 287.7 264 57.6
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 2.0e-74 283.5 264 56.8
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 3.2e-72 276.2 260 56.2
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.7e-68 262.7 265 50.9
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 3.1e-67 259.6 263 51.0
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.2e-66 257.7 287 48.8
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.2e-66 257.7 287 48.8
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.0e-66 256.9 265 51.3
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 2.9e-65 253.1 263 50.6
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.4e-64 250.8 265 49.4
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 2.5e-64 250.0 265 49.8
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 9.3e-64 248.1 265 47.5
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 6.1e-63 245.4 265 49.1
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.3e-62 244.2 265 48.7
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 5.1e-62 242.3 265 49.8
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 6.7e-62 241.9 264 48.1
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.9e-61 240.4 265 48.3
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 2.5e-61 240.0 264 48.1
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 3.3e-61 239.6 265 49.1
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 9.7e-61 238.0 261 47.9
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.3e-60 237.7 264 49.6
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 2.8e-60 236.5 264 49.6
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 3.7e-60 236.1 262 48.5
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 4.8e-60 235.7 166 65.1
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 8.2e-60 235.0 266 49.6
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.1e-59 233.0 265 46.4
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 5.3e-59 232.3 264 46.6
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 6.9e-59 231.9 265 46.4
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 6.9e-59 231.9 265 47.2
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 6.9e-59 231.9 258 47.7
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 1.5e-58 230.7 265 47.5
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.4e-58 229.6 263 47.5
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 4.5e-58 229.2 265 46.4
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 3.8e-57 226.1 265 45.7
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 3.8e-57 226.1 270 45.6
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 5.0e-57 225.7 265 44.9
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.4e-56 224.2 265 45.3
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.5e-56 223.4 264 44.7
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 4.2e-56 222.6 265 46.8
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 4.2e-56 222.6 264 46.2
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 7.2e-56 221.9 170 61.8
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 1.2e-55 221.1 263 46.8
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 2.1e-55 220.3 263 47.1
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 2.1e-55 220.3 264 46.2
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 7.9e-55 218.4 266 47.0
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.8e-54 217.2 266 45.9
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.8e-54 217.2 303 42.6
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 3.9e-54 216.1 270 44.1
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 6.7e-54 215.3 262 46.6
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 1.1e-53 214.5 239 46.9
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 2.0e-53 213.8 267 42.7
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 2.0e-53 213.8 274 43.8
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 2.6e-53 213.4 272 41.2
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 3.3e-53 213.0 275 42.9
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 4.4e-53 212.6 277 43.3
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 7.4e-53 211.8 293 40.3
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 7.4e-53 211.8 287 44.3
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 1.3e-52 211.1 259 46.7
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 2.8e-52 209.9 270 42.2
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 3.7e-52 209.5 268 42.5
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 3.7e-52 209.5 289 41.2
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 3.7e-52 209.5 251 45.8
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 8.2e-52 208.4 269 42.4
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.4e-51 207.6 267 41.9
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.8e-51 207.2 268 41.8
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 1.8e-51 207.2 266 44.7
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 4.1e-51 206.1 285 42.5
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 6.9e-51 205.3 290 41.4
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 6.9e-51 205.3 290 41.4
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 9.1e-51 204.9 266 42.9
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 2.0e-50 203.8 281 41.3
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 2.6e-50 203.4 271 43.9
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 3.4e-50 203.0 305 38.7
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 3.4e-50 203.0 305 38.7
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 3.4e-50 203.0 271 43.9
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 5.0e-49 199.1 165 57.6
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 8.5e-49 198.4 280 40.0
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 2.1e-47 193.7 221 48.9
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.7e-47 193.4 170 54.1
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 3.6e-47 193.0 268 42.2
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 4.7e-47 192.6 229 47.6
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 5.7e-45 185.7 273 41.4
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 7.4e-45 185.3 223 47.1
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 2.8e-44 183.3 276 38.4
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 6.3e-44 182.2 228 45.6
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 6.3e-44 182.2 272 41.9
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 4.1e-43 179.5 287 38.3
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 4.1e-43 179.5 221 45.7
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 5.3e-43 179.1 219 44.3
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.2e-41 173.7 229 41.0
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 3.8e-41 172.9 258 39.5
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 5.0e-41 172.6 258 38.8
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.1e-40 171.4 266 37.2
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 1.5e-40 171.0 279 40.5
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 3.2e-40 169.9 267 37.8
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 4.0e-38 162.9 217 44.2
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 3.3e-37 159.8 202 41.6
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 1.1e-35 154.8 264 36.7
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.1e-35 154.8 274 35.8
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.8e-35 154.1 266 36.8
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 1.2e-34 151.4 268 37.3
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 2.5e-32 143.7 222 38.3
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 2.1e-31 140.6 267 34.8
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 6.1e-31 139.0 291 33.7
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 1.2e-29 134.8 163 41.1
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 2.2e-28 130.6 207 38.6
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.8e-27 127.5 126 46.0
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 5.9e-26 122.5 82 65.9
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 1.7e-25 120.9 98 54.1
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 4.4e-21 106.3 129 42.6
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 5.0e-17 92.8 180 34.4
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.7e-15 86.3 137 35.8
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 1.8e-14 84.3 183 37.7
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 6.8e-14 82.4 176 30.7
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 8.3e-12 75.5 102 42.2
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 5.9e-10 69.3 59 54.2
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 4.3e-08 63.2 70 41.4
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 9.5e-08 62.0 48 54.2
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 4.7e-07 59.7 40 65.0


User provided reference genes

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