Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 6.0e-146 520.8 256 100.0
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 6.0e-146 520.8 256 100.0
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 4.6e-138 494.6 256 93.8
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 2.3e-137 492.3 257 94.2
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 6.7e-137 490.7 256 93.4
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 8.7e-137 490.3 257 93.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 5.7e-136 487.6 257 93.4
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 9.7e-136 486.9 256 93.4
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 9.7e-136 486.9 257 93.0
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 7.6e-133 477.2 257 91.1
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.0e-132 476.9 257 90.3
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 2.2e-132 475.7 257 91.1
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 3.9e-129 464.9 257 88.3
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.1e-128 463.4 255 87.5
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 1.5e-128 463.0 257 89.1
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.5e-128 463.0 257 87.2
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 1.5e-128 463.0 256 88.3
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 3.3e-128 461.8 256 87.9
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 5.7e-128 461.1 257 87.9
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 5.7e-128 461.1 257 87.9
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 9.7e-128 460.3 257 87.2
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 4.8e-127 458.0 257 86.8
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 6.3e-127 457.6 257 87.2
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 1.1e-126 456.8 257 86.4
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.8e-126 456.1 255 86.3
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 2.4e-126 455.7 257 86.8
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 6.9e-126 454.1 257 84.8
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 1.2e-125 453.4 257 86.0
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.2e-125 453.4 257 86.0
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.2e-125 453.4 257 86.0
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 7.7e-125 450.7 257 84.4
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 85.6
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 83.7
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 83.7
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 85.6
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 6.5e-124 447.6 257 84.8
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 6.5e-124 447.6 257 83.7
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 84.0
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.4e-123 446.4 256 83.6
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 2.5e-123 445.7 257 83.3
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.5e-123 445.7 256 83.2
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.5e-123 445.7 256 83.2
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 4.2e-123 444.9 256 83.6
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.5e-123 444.5 257 84.0
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 5.5e-123 444.5 257 83.3
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 7.2e-123 444.1 257 82.9
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 9.4e-123 443.7 257 84.8
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 2.1e-122 442.6 257 82.1
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 2.7e-122 442.2 257 82.9
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 1.4e-121 439.9 258 83.3
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.8e-121 439.5 256 83.2
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.8e-121 439.5 256 83.2
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.8e-121 439.5 256 83.2
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 1.8e-121 439.5 254 84.6
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 3.0e-121 438.7 257 82.9
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 5.1e-121 438.0 254 80.7
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.5e-120 436.4 257 80.9
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 3.3e-120 435.3 254 83.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 3.3e-120 435.3 257 81.3
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 5.7e-120 434.5 256 83.2
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 7.4e-120 434.1 265 80.8
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.3e-119 433.3 257 82.5
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 1.1e-118 430.3 257 81.7
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 1.4e-118 429.9 257 81.7
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 4.1e-118 428.3 302 70.9
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 5.3e-118 427.9 257 80.5
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 6.9e-118 427.6 257 80.5
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.5e-117 426.4 271 77.5
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 2.6e-117 425.6 258 81.0
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 4.5e-117 424.9 263 79.1
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 79.8
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 79.8
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 79.8
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 79.8
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 79.8
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.7e-116 422.9 271 76.8
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 2.2e-116 422.5 257 79.4
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.2e-116 422.5 257 80.2
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 2.9e-116 422.2 257 79.8
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 2.9e-116 422.2 257 79.4
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 2.9e-116 422.2 257 79.4
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 2.9e-116 422.2 256 77.0
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 8.5e-116 420.6 257 79.0
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 4.7e-114 414.8 257 80.9
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 6.7e-113 411.0 257 77.4
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 2.6e-112 409.1 230 86.5
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 4.4e-112 408.3 257 77.0
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 4.4e-112 408.3 258 77.1
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.3e-111 406.8 255 77.3
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.8e-111 405.6 257 74.7
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 2.4e-110 402.5 257 76.7
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 2.2e-108 396.0 254 76.0
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.9e-107 392.9 253 76.3
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.6e-106 389.8 257 73.5
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 4.0e-105 385.2 280 71.8
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.8e-103 379.0 250 74.0
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 7.0e-102 374.4 214 82.7
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 3.5e-101 372.1 257 74.3
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 2.9e-100 369.0 257 73.2
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 2.3e-97 359.4 231 73.6
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 4.0e-97 358.6 214 79.4
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 8.8e-97 357.5 223 78.5
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 1.2e-96 357.1 255 68.2
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 3.8e-92 342.0 247 68.4
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.3e-89 332.8 198 81.8
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 1.3e-87 327.0 251 65.3
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 7.0e-86 321.2 262 63.0
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 1.6e-85 320.1 250 63.2
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.1e-83 313.9 203 74.4
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 4.1e-78 295.4 159 86.8
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 1.3e-68 263.8 170 72.9
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 2.5e-67 259.6 142 90.1
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 2.8e-66 256.1 132 89.4
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 4.7e-66 255.4 153 80.4
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 1.6e-61 240.4 254 51.2
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 8.6e-60 234.6 247 47.8
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 2.8e-58 229.6 130 87.7
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 3.1e-57 226.1 198 62.1
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 9.2e-54 214.5 116 81.9
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.0e-53 211.8 112 89.3
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.7e-52 210.3 271 42.8
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 2.5e-51 206.5 114 90.4
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 7.3e-51 204.9 105 93.3
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 9.9e-48 194.5 105 87.6
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.1e-46 191.0 156 62.2
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.7e-44 183.7 105 82.9
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 7.3e-43 178.3 104 88.5
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 8.1e-42 174.9 105 79.0
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.1e-41 172.9 257 44.0
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 8.1e-34 148.3 91 71.4
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 7.1e-30 135.2 117 62.4
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 8.7e-28 128.3 67 89.6
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 8.2e-26 121.7 96 64.6
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 9.3e-22 108.2 102 56.9
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 1.1e-19 101.3 60 81.7
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 1.3e-15 87.8 60 73.3
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.6e-13 79.3 55 70.9
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 4.8e-10 69.3 40 87.5


User provided reference genes

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