Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.4e-122 443.7 382 100.0
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.6e-40 169.1 86 95.3
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 9.6e-39 165.2 450 61.3
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 5.3e-37 159.5 81 96.3
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.5e-31 141.4 445 54.2
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.8e-30 137.1 85 77.6
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 2.6e-28 130.6 456 51.3
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.4e-26 124.8 84 70.2
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 3.2e-26 123.6 81 69.1
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 5.5e-26 122.9 425 36.7
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.3e-26 122.1 101 60.4
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.3e-26 122.1 101 60.4
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 9.3e-26 122.1 457 48.1
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.3e-24 117.5 83 67.5
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 5.1e-24 116.3 413 38.3
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.9e-23 114.4 81 66.7
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 4.3e-23 113.2 81 65.4
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 5.7e-23 112.8 79 67.1
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.6e-22 111.3 84 58.3
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.8e-22 109.8 78 62.8
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.8e-22 109.8 104 53.8
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.1e-21 108.6 452 54.2
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.4e-21 108.2 80 57.5
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.4e-21 107.5 104 53.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 3.1e-21 107.1 83 61.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 9.0e-21 105.5 99 55.6
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 2.0e-20 104.4 82 59.8
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 2.0e-20 104.4 79 60.8
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 4.5e-20 103.2 81 56.8
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 4.5e-20 103.2 168 38.7
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 5.9e-20 102.8 83 57.8
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 5.9e-20 102.8 81 56.8
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 5.9e-20 102.8 79 57.0
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 7.6e-20 102.4 74 63.5
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 1.3e-19 101.7 83 60.2
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.7e-19 101.3 277 30.0
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 5.0e-19 99.8 80 57.5
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 5.0e-19 99.8 82 58.5
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-18 98.6 70 68.6
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 1.1e-18 98.6 81 55.6
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.1e-18 98.6 85 51.8
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.4e-18 98.2 77 58.4
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.4e-18 98.2 77 61.0
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 1.9e-18 97.8 413 50.8
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.9e-18 97.8 71 66.2
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.5e-18 97.4 80 56.2
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 3.2e-18 97.1 82 56.1
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 4.2e-18 96.7 75 60.0
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 5.5e-18 96.3 79 55.7
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.6e-17 94.7 454 37.2
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 2.1e-17 94.4 84 48.8
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 2.1e-17 94.4 431 25.8
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 2.1e-17 94.4 431 25.8
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 2.1e-17 94.4 81 53.1
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 2.7e-17 94.0 106 49.1
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.7e-17 94.0 67 67.2
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 2.7e-17 94.0 67 67.2
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 3.5e-17 93.6 71 62.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 3.5e-17 93.6 73 68.5
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.5e-17 93.6 68 61.8
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 3.5e-17 93.6 68 61.8
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.0e-16 92.0 81 54.3
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.3e-16 91.7 81 50.6
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.3e-16 91.7 73 56.2
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.3e-16 91.7 82 53.7
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 2.3e-16 90.9 80 52.5
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 2.3e-16 90.9 67 61.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.0e-16 90.5 80 50.0
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 3.0e-16 90.5 80 52.5
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 6.7e-16 89.4 69 68.1
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 6.7e-16 89.4 71 64.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 8.7e-16 89.0 67 64.2
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.9e-15 87.8 77 51.9
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 7.4e-15 85.9 68 58.8
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.3e-14 85.1 83 44.6
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.6e-14 84.7 71 59.2
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.6e-14 84.7 67 61.2
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 2.8e-14 84.0 79 46.8
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.7e-14 83.6 83 45.8
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 4.8e-14 83.2 80 52.5
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 6.3e-14 82.8 79 49.4
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.3e-14 82.8 79 50.6
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 8.2e-14 82.4 71 54.9
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.8e-13 81.3 83 42.2
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.4e-13 80.9 79 44.3
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 5.3e-13 79.7 142 38.0
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 5.3e-13 79.7 67 58.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 6.9e-13 79.3 68 55.9
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 6.9e-13 79.3 68 55.9
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.9e-13 79.3 79 46.8
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 9.0e-13 79.0 79 44.3
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.2e-12 78.6 71 54.9
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 1.2e-12 78.6 142 37.3
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.5e-12 78.2 82 46.3
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 2.0e-12 77.8 79 44.3
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.0e-12 77.8 68 55.9
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 3.4e-12 77.0 78 43.6
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 7.7e-12 75.9 80 43.8
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.0e-11 75.5 72 47.2
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.0e-11 75.5 72 47.2
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.7e-11 74.7 77 45.5
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 2.2e-11 74.3 68 50.0
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 2.2e-11 74.3 79 45.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 2.9e-11 73.9 67 53.7
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 2.9e-11 73.9 74 44.6
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.9e-11 73.9 73 43.8
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.9e-11 73.9 71 46.5
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.8e-11 73.6 69 47.8
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 6.5e-11 72.8 70 45.7
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 8.5e-11 72.4 60 51.7
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 8.5e-11 72.4 75 45.3
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 8.5e-11 72.4 52 71.2
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.1e-10 72.0 75 45.3
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.4e-10 71.6 68 51.5
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 3.2e-10 70.5 72 43.1
Lalb_Chr15g0082471 Lupinus albus HOM05D002132 ORTHO05D002168 9.4e-10 68.9 47 70.2
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 1.6e-09 68.2 75 44.0
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.7e-09 67.4 57 52.6
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.7e-09 67.4 57 52.6
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 4.6e-09 66.6 50 66.0
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.3e-08 64.3 77 40.3
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.3e-08 64.3 46 63.0
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 3.0e-08 63.9 48 62.5
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 5.1e-08 63.2 66 39.4
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 8.8e-08 62.4 45 68.9
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 2.0e-07 61.2 126 31.0
Eucgr.I02459 Eucalyptus grandis HOM05D000891 ORTHO05D000761 2.5e-07 60.8 132 25.0
Eucgr.J03058 Eucalyptus grandis HOM05D000891 ORTHO05D000761 5.7e-07 59.7 156 26.3
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 5.7e-07 59.7 47 59.6
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 7.4e-07 59.3 148 28.4
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 7.4e-07 59.3 153 27.5
Duzib160G0410 Durio zibethinus HOM05D000891 ORTHO05D000761 9.7e-07 58.9 126 29.4
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 9.7e-07 58.9 160 30.0
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 9.7e-07 58.9 46 60.9
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 9.7e-07 58.9 163 27.0
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.3e-06 58.5 74 37.8
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.7e-06 58.2 79 36.7
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 1.7e-06 58.2 47 63.8
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.7e-06 58.2 153 27.5
GSVIVG01012782001 Vitis vinifera HOM05D003039 ORTHO05D008410 1.7e-06 58.2 98 34.7
Lalb_Chr19g0127261 Lupinus albus HOM05D005674 ORTHO05D007015 3.7e-06 57.0 82 42.7
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 3.7e-06 57.0 121 30.6
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 3.7e-06 57.0 111 30.6
ATR0580G437 Amborella trichopoda HOM05D030519 ORTHO05D021219 4.8e-06 56.6 90 34.4
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 4.8e-06 56.6 128 32.8
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 6.3e-06 56.2 86 33.7
Lalb_Chr06g0171701 Lupinus albus HOM05D005674 ORTHO05D007015 8.2e-06 55.8 51 54.9


User provided reference genes

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