Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M9SKFA Arachis hypogaea HOM05D001890 ORTHO05D003442 3.3e-65 251.5 122 100.0
arahy.Tifrunner.gnm1.ann1.JU9MFG Arachis hypogaea HOM05D001890 ORTHO05D003442 2.1e-48 195.7 107 91.6
arahy.Tifrunner.gnm1.ann1.3V0CBS Arachis hypogaea HOM05D001890 ORTHO05D003442 2.6e-30 135.6 81 85.2
Phvul.007G266400 Phaseolus vulgaris HOM05D001890 ORTHO05D003442 3.1e-23 112.1 82 69.5
VMungo0720G1360 Vigna mungo HOM05D001890 ORTHO05D003442 9.0e-23 110.5 82 70.7
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.0e-22 109.4 82 68.3
Medtr1g055315 Medicago truncatula HOM05D001890 ORTHO05D003442 2.6e-22 109.0 81 70.4
Ca_11670_v3 Cicer arietinum L. HOM05D001890 ORTHO05D003442 3.4e-22 108.6 83 67.5
Glyma.10G083700 Glycine max HOM05D001890 ORTHO05D003442 5.8e-22 107.8 79 70.9
Glyma.02G193200 Glycine max HOM05D001890 ORTHO05D003442 3.8e-21 105.1 79 69.6
Psat6g097960 Pisum sativum HOM05D001890 ORTHO05D003442 1.4e-20 103.2 82 63.4
Lj5g0000561 Lotus japonicus HOM05D001890 ORTHO05D003442 3.2e-20 102.1 82 65.9
arahy.Tifrunner.gnm1.ann1.AQHB6D Arachis hypogaea HOM05D001890 ORTHO05D003442 7.1e-20 100.9 78 65.4
arahy.Tifrunner.gnm1.ann1.M3JRXW Arachis hypogaea HOM05D001890 ORTHO05D003442 7.1e-20 100.9 78 65.4
VMungo1383G2242 Vigna mungo HOM05D001890 ORTHO05D003442 9.3e-20 100.5 78 65.4
Glyma.19G201300 Glycine max HOM05D001890 ORTHO05D003442 1.2e-19 100.1 77 67.5
Lalb_Chr01g0017781 Lupinus albus HOM05D001890 ORTHO05D003442 1.6e-19 99.8 82 64.6
Glyma.03G203900 Glycine max HOM05D001890 ORTHO05D003442 2.1e-19 99.4 77 66.2
Duzib128G1367 Durio zibethinus HOM05D001890 ORTHO05D003442 2.7e-19 99.0 79 62.0
Lalb_Chr20g0111261 Lupinus albus HOM05D001890 ORTHO05D003442 3.5e-19 98.6 82 63.4
Thecc.05G108400 Theobroma cacao HOM05D001890 ORTHO05D003442 3.5e-19 98.6 79 63.3
Psat3g028200 Pisum sativum HOM05D001890 ORTHO05D003442 4.6e-19 98.2 76 68.4
COL.COLO4_29518 Corchorus olitorius HOM05D001890 ORTHO05D003442 6.0e-19 97.8 79 62.0
QL07p026881 Quercus lobata HOM05D001890 ORTHO05D003442 6.0e-19 97.8 82 57.3
Ca_09069_v3 Cicer arietinum L. HOM05D001890 ORTHO05D003442 1.0e-18 97.1 76 64.5
Lj1g0026398 Lotus japonicus HOM05D001890 ORTHO05D003442 1.0e-18 97.1 82 61.0
CANSAT64G0653 Cannabis sativa HOM05D001890 ORTHO05D003442 1.3e-18 96.7 79 60.8
Haze_20107 Corylus avellana HOM05D001890 ORTHO05D003442 2.3e-18 95.9 98 53.1
Gohir.D09G129000 Gossypium hirsutum HOM05D001890 ORTHO05D003442 2.3e-18 95.9 79 60.8
Gorai.006G147700 Gossypium raimondii HOM05D001890 ORTHO05D003442 2.3e-18 95.9 79 60.8
Phvul.001G197400 Phaseolus vulgaris HOM05D001890 ORTHO05D003442 3.0e-18 95.5 81 60.5
TWI77G0744 Tripterygium wilfordii HOM05D001890 ORTHO05D003442 3.0e-18 95.5 79 63.3
Duzib093G1618 Durio zibethinus HOM05D001890 ORTHO05D003442 5.1e-18 94.7 80 60.0
Cpa.g.sc104.3 Carica papaya HOM05D001890 ORTHO05D003442 6.6e-18 94.4 79 59.5
Gohir.A09G132700 Gossypium hirsutum HOM05D001890 ORTHO05D003442 8.7e-18 94.0 79 59.5
Medtr7g106640 Medicago truncatula HOM05D001890 ORTHO05D003442 8.7e-18 94.0 75 66.7
Cfa020085 Carpinus fangiana HOM05D001890 ORTHO05D003442 1.1e-17 93.6 82 57.3
CiPaw.09G022800 Carya illinoinensis HOM05D001890 ORTHO05D003442 1.5e-17 93.2 79 60.8
Eucgr.A02559 Eucalyptus grandis HOM05D001890 ORTHO05D003442 1.9e-17 92.8 84 54.8
TPR.G25807 Trifolium pratense HOM05D001890 ORTHO05D003442 1.9e-17 92.8 76 63.2
Prupe.7G091200 Prunus persica HOM05D001890 ORTHO05D003442 3.3e-17 92.0 81 54.3
CiPaw.10G019600 Carya illinoinensis HOM05D001890 ORTHO05D003442 5.6e-17 91.3 83 54.2
Gohir.D01G122600 Gossypium hirsutum HOM05D001890 ORTHO05D003442 7.3e-17 90.9 82 54.9
Gorai.002G153500 Gossypium raimondii HOM05D001890 ORTHO05D003442 7.3e-17 90.9 82 54.9
Sed0008069 Sechium edule HOM05D001890 ORTHO05D003442 9.6e-17 90.5 79 55.7
Sed0014759 Sechium edule HOM05D001890 ORTHO05D003442 9.6e-17 90.5 79 55.7
Migut.L01851 Erythranthe guttata HOM05D001890 ORTHO05D003442 1.3e-16 90.1 82 53.7
TAR623G0995 Trochodendron aralioides HOM05D001890 ORTHO05D003442 1.3e-16 90.1 82 53.7
TAR369G0675 Trochodendron aralioides HOM05D001890 ORTHO05D003442 2.1e-16 89.4 79 57.0
MSTRG.5917 Avicennia marina HOM05D001890 ORTHO05D003442 2.8e-16 89.0 79 57.0
CSS0016780 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D003442 2.8e-16 89.0 82 53.7
SalBow5G5266 Salvia bowleyana HOM05D001890 ORTHO05D003442 3.6e-16 88.6 82 52.4
Ciclev10011250m.g Citrus clementina HOM05D001890 ORTHO05D003442 4.8e-16 88.2 79 58.2
CsaV3_3G038170 Cucumis sativus L. HOM05D001890 ORTHO05D003442 4.8e-16 88.2 79 54.4
FvH4_6g20770 Fragaria vesca HOM05D001890 ORTHO05D003442 4.8e-16 88.2 79 57.0
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 4.8e-16 88.2 79 57.0
MD14G1042900 Malus domestica HOM05D001890 ORTHO05D003442 4.8e-16 88.2 81 54.3
Sed0025654 Sechium edule HOM05D001890 ORTHO05D003442 4.8e-16 88.2 82 52.4
arahy.Tifrunner.gnm1.ann1.F45T9K Arachis hypogaea HOM05D001890 ORTHO05D003442 6.2e-16 87.8 55 80.0
Hma1.2p1_0969F.1_g242598 Hydrangea macrophylla HOM05D001890 ORTHO05D003442 6.2e-16 87.8 82 53.7
Hma1.2p1_2851F.1_g329440 Hydrangea macrophylla HOM05D001890 ORTHO05D003442 6.2e-16 87.8 82 53.7
Potri.016G067000 Populus trichocarpa HOM05D001890 ORTHO05D003442 6.2e-16 87.8 79 54.4
Sabra16G0068300 Salix brachista HOM05D001890 ORTHO05D003442 6.2e-16 87.8 79 54.4
Migut.J00744 Erythranthe guttata HOM05D001890 ORTHO05D003442 8.1e-16 87.4 82 52.4
Lj1A1058T56 Lonicera japonica HOM05D001890 ORTHO05D003442 8.1e-16 87.4 82 51.2
Manes.08G036000 Manihot esculenta HOM05D001890 ORTHO05D003442 8.1e-16 87.4 79 53.2
ClCG10G018130 Citrullus lanatus HOM05D001890 ORTHO05D003442 1.1e-15 87.0 79 53.2
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 1.1e-15 87.0 82 52.4
FAN05G0175 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.1e-15 87.0 77 57.1
FAN05G0573 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.1e-15 87.0 77 57.1
MD12G1043900 Malus domestica HOM05D001890 ORTHO05D003442 1.4e-15 86.7 81 53.1
A03p02730 Brassica napus HOM05D001890 ORTHO05D003442 1.8e-15 86.3 79 54.4
Gohir.A01G135400 Gossypium hirsutum HOM05D001890 ORTHO05D003442 2.4e-15 85.9 82 53.7
vmacro09092 Vaccinium macrocarpon HOM05D001890 ORTHO05D003442 3.1e-15 85.5 79 51.9
AUR62030696 Chenopodium quinoa HOM05D001890 ORTHO05D003442 4.0e-15 85.1 79 54.4
Manes.09G043100 Manihot esculenta HOM05D001890 ORTHO05D003442 4.0e-15 85.1 79 53.2
Oeu020167.1 Olea europaea HOM05D001890 ORTHO05D003442 4.0e-15 85.1 82 48.8
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 5.3e-15 84.7 78 52.6
PGR004G2025 Punica granatum HOM05D001890 ORTHO05D003442 5.3e-15 84.7 79 57.0
RcHm_v2.0_Chr3g0476671 Rosa chinensis HOM05D001890 ORTHO05D003442 5.3e-15 84.7 79 53.2
EL10Ac5g11825 Beta vulgaris HOM05D001890 ORTHO05D003442 9.0e-15 84.0 79 53.2
Sc07g0006350 Simmondsia chinensis HOM05D001890 ORTHO05D003442 1.5e-14 83.2 82 51.2
Ah.12g059450 Amaranthus hybridus HOM05D001890 ORTHO05D003442 2.0e-14 82.8 79 50.6
Rhsim02G0181100 Rhododendron simsii HOM05D001890 ORTHO05D003442 2.0e-14 82.8 82 50.0
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 2.6e-14 82.4 82 53.7
Thhalv10013326m.g Eutrema salsugineum HOM05D001890 ORTHO05D003442 2.6e-14 82.4 82 52.4
Nn2g14393 Nelumbo nucifera HOM05D001890 ORTHO05D003442 2.6e-14 82.4 82 50.0
Peaxi162Scf00203g00101 Petunia axillaris HOM05D001890 ORTHO05D003442 2.6e-14 82.4 76 56.6
Actinidia06190 Actinidia chinensis HOM05D001890 ORTHO05D003442 3.4e-14 82.0 82 48.8
arahy.Tifrunner.gnm1.ann1.0N260W Arachis hypogaea HOM05D001890 ORTHO05D000566 3.4e-14 82.0 73 60.3
THA.LOC104816629 Tarenaya hassleriana HOM05D001890 ORTHO05D003442 3.4e-14 82.0 83 53.0
Potri.006G201000 Populus trichocarpa HOM05D001890 ORTHO05D003442 4.5e-14 81.6 79 50.6
Nn6g34599 Nelumbo nucifera HOM05D001890 ORTHO05D003442 5.8e-14 81.3 82 51.2
THA.LOC104826799 Tarenaya hassleriana HOM05D001890 ORTHO05D003442 5.8e-14 81.3 82 50.0
AL6G16530 Arabidopsis lyrata HOM05D001890 ORTHO05D003442 7.6e-14 80.9 76 51.3
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 7.6e-14 80.9 78 59.0
Cc01_g02980 Coffea canephora HOM05D001890 ORTHO05D003442 7.6e-14 80.9 79 48.1
SHI28306 Sapria himalayana HOM05D001890 ORTHO05D003442 7.6e-14 80.9 70 52.9
BraA03t09636Z Brassica rapa HOM05D001890 ORTHO05D003442 9.9e-14 80.5 78 50.0
Hund10836 Selenicereus undatus HOM05D001890 ORTHO05D003442 9.9e-14 80.5 82 48.8
Actinidia07949 Actinidia chinensis HOM05D001890 ORTHO05D003442 1.3e-13 80.1 79 50.6
Aqoxy1G00604 Aquilegia oxysepala HOM05D001890 ORTHO05D003442 1.3e-13 80.1 79 49.4
CAN.G674.15 Capsicum annuum HOM05D001890 ORTHO05D003442 1.3e-13 80.1 82 53.7
Cc01_g03030 Coffea canephora HOM05D001890 ORTHO05D003442 1.3e-13 80.1 82 46.3
AT5G06440 Arabidopsis thaliana HOM05D001890 ORTHO05D003442 1.7e-13 79.7 76 50.0
Solyc10g081770.3 Solanum lycopersicum HOM05D001890 ORTHO05D003442 2.2e-13 79.3 81 50.6
PGSC0003DMG400021336 Solanum tuberosum HOM05D001890 ORTHO05D003442 2.2e-13 79.3 79 50.6
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 2.9e-13 79.0 82 52.4
Carub.0006s0532 Capsella rubella HOM05D001890 ORTHO05D003442 2.9e-13 79.0 76 50.0
CAN.G911.29 Capsicum annuum HOM05D001890 ORTHO05D003442 2.9e-13 79.0 82 48.8
CARHR206750 Cardamine hirsuta HOM05D001890 ORTHO05D003442 2.9e-13 79.0 76 51.3
PSO339G5959 Papaver somniferum HOM05D001890 ORTHO05D003442 2.9e-13 79.0 82 48.8
Solyc01g006870.4 Solanum lycopersicum HOM05D001890 ORTHO05D003442 2.9e-13 79.0 82 48.8
Sopen01g002860 Solanum pennellii HOM05D001890 ORTHO05D003442 2.9e-13 79.0 82 48.8
PGSC0003DMG400028231 Solanum tuberosum HOM05D001890 ORTHO05D003442 3.8e-13 78.6 82 51.2
GSVIVG01022534001 Vitis vinifera HOM05D001890 ORTHO05D003442 3.8e-13 78.6 82 48.8
Aa31LG3G5200 Aethionema arabicum HOM05D001890 ORTHO05D003442 4.9e-13 78.2 80 48.8
PSO384G4950 Papaver somniferum HOM05D001890 ORTHO05D003442 4.9e-13 78.2 82 48.8
HanXRQChr02g0053331 Helianthus annuus HOM05D001890 ORTHO05D003442 6.4e-13 77.8 82 43.9
Sopen10g032280 Solanum pennellii HOM05D001890 ORTHO05D003442 6.4e-13 77.8 82 50.0
PSO063G3472 Papaver somniferum HOM05D001890 ORTHO05D003442 8.4e-13 77.4 82 48.8
C05p56160 Brassica napus HOM05D001890 ORTHO05D003442 1.4e-12 76.6 77 48.1
BcaC06g32374 Brassica carinata HOM05D001890 ORTHO05D003442 1.9e-12 76.3 82 48.8
C09p70360 Brassica napus HOM05D001890 ORTHO05D003442 1.9e-12 76.3 82 48.8
BolC5t34281H Brassica oleracea HOM05D001890 ORTHO05D003442 1.9e-12 76.3 74 50.0
Nitab4.5_0005218g0020 Nicotiana tabacum HOM05D001890 ORTHO05D003442 1.9e-12 76.3 92 45.7
Sp6g36420 Schrenkiella parvula HOM05D001890 ORTHO05D003442 1.9e-12 76.3 82 50.0
BraA10t45034Z Brassica rapa HOM05D001890 ORTHO05D003442 3.2e-12 75.5 88 45.5
HPP92_005860 Vanilla planifolia HOM05D001890 ORTHO05D003442 3.2e-12 75.5 83 48.2
BraA05t22558Z Brassica rapa HOM05D001890 ORTHO05D003442 4.2e-12 75.1 77 46.8
BcaB04g18657 Brassica carinata HOM05D001890 ORTHO05D003442 5.4e-12 74.7 72 50.0
BcaC05g29335 Brassica carinata HOM05D001890 ORTHO05D003442 5.4e-12 74.7 77 46.8
BcaC06g32575 Brassica carinata HOM05D001890 ORTHO05D003442 5.4e-12 74.7 82 46.3
BolC9t59781H Brassica oleracea HOM05D001890 ORTHO05D003442 5.4e-12 74.7 78 50.0
Os11g0568700 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D003442 5.4e-12 74.7 79 41.8
Aa31sc52G250 Aethionema arabicum HOM05D001890 ORTHO05D003442 7.1e-12 74.3 73 53.4
A10p29950 Brassica napus HOM05D001890 ORTHO05D003442 7.1e-12 74.3 82 47.6
CDE04G0663 Ceratophyllum demersum HOM05D001890 ORTHO05D003442 9.3e-12 73.9 79 43.0
BcaB06g25587 Brassica carinata HOM05D001890 ORTHO05D003442 1.2e-11 73.6 77 46.8
PSO339G0680 Papaver somniferum HOM05D001890 ORTHO05D003442 1.6e-11 73.2 79 44.3
Cc06_g06840 Coffea canephora HOM05D001890 ORTHO05D003442 2.1e-11 72.8 79 46.8
Lsat_1_v5_gn_6_34701 Lactuca sativa HOM05D001890 ORTHO05D003442 2.1e-11 72.8 82 42.7
MBI11_g01309_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D003442 2.1e-11 72.8 79 46.8
PSO384G0895 Papaver somniferum HOM05D001890 ORTHO05D003442 2.1e-11 72.8 79 43.0
A05p37600 Brassica napus HOM05D001890 ORTHO05D003442 2.7e-11 72.4 74 47.3
ECA233G4742 Erigeron canadensis HOM05D001890 ORTHO05D003442 3.5e-11 72.0 82 41.5
ATR0697G280 Amborella trichopoda HOM05D001890 ORTHO05D003442 4.6e-11 71.6 82 52.4
arahy.Tifrunner.gnm1.ann1.WTCC59 Arachis hypogaea HOM05D001890 ORTHO05D003442 6.0e-11 71.2 63 60.3
A03p37250 Brassica napus HOM05D001890 ORTHO05D003442 6.0e-11 71.2 72 47.2
HanXRQChr13g0398661 Helianthus annuus HOM05D001890 ORTHO05D003442 6.0e-11 71.2 79 44.3
AL3G23280 Arabidopsis lyrata HOM05D001890 ORTHO05D003442 1.0e-10 70.5 69 47.8
BcaC01g04089 Brassica carinata HOM05D001890 ORTHO05D003442 2.3e-10 69.3 72 45.8
Thhalv10020420m.g Eutrema salsugineum HOM05D001890 ORTHO05D003442 2.3e-10 69.3 77 44.2
CARHR086270 Cardamine hirsuta HOM05D001890 ORTHO05D003442 3.0e-10 68.9 75 44.0
AUR62036337 Chenopodium quinoa HOM05D001890 ORTHO05D003442 3.0e-10 68.9 70 51.4
Peaxi162Scf00675g00056 Petunia axillaris HOM05D001890 ORTHO05D003442 3.0e-10 68.9 74 47.3
BraA03t12885Z Brassica rapa HOM05D001890 ORTHO05D003442 3.9e-10 68.6 72 45.8
Carub.0003s1106 Capsella rubella HOM05D001890 ORTHO05D003442 5.1e-10 68.2 69 47.8
C03p45110 Brassica napus HOM05D001890 ORTHO05D003442 6.7e-10 67.8 72 44.4
BolC3t16775H Brassica oleracea HOM05D001890 ORTHO05D003442 6.7e-10 67.8 72 44.4
Sp3g09950 Schrenkiella parvula HOM05D001890 ORTHO05D003442 6.7e-10 67.8 81 44.4
AT3G11720 Arabidopsis thaliana HOM05D001890 ORTHO05D003442 1.1e-09 67.0 69 44.9
PGR083G0563 Punica granatum HOM05D000218 ORTHO05D000125 1.1e-09 67.0 77 48.1
PSO384G4065 Papaver somniferum HOM05D001890 ORTHO05D003442 1.9e-09 66.2 82 39.0
Psat1g223320 Pisum sativum HOM05D001890 ORTHO05D003442 2.5e-09 65.9 55 60.0
Medtr2g066850 Medicago truncatula HOM05D002807 ORTHO05D018033 4.3e-09 65.1 97 42.3
SEGI_19574 Sequoiadendron giganteum HOM05D001890 ORTHO05D003442 7.4e-09 64.3 81 43.2
Aqoxy2G00642 Aquilegia oxysepala HOM05D001890 ORTHO05D003442 1.6e-08 63.2 80 41.2
SMO356G0493 Selaginella moellendorffii HOM05D001890 ORTHO05D003442 1.6e-08 63.2 85 35.3
SGA_v2.0_scaffold392G50676 Striga asiatica HOM05D001890 ORTHO05D003442 1.4e-07 60.1 71 43.7
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 4.0e-07 58.5 37 75.7
Sabra06G0154700 Salix brachista HOM05D001890 ORTHO05D003442 2.0e-06 56.2 61 45.9
AagrBONN_evm.TU.Sc2ySwM_362.1054 Anthoceros agrestis HOM05D001890 ORTHO05D003442 2.6e-06 55.8 80 38.8
Pp3c9_24430 Physcomitrium patens HOM05D001890 ORTHO05D003442 2.6e-06 55.8 83 39.8
Nitab4.5_0000721g0220 Nicotiana tabacum HOM05D001890 ORTHO05D003442 3.4e-06 55.5 32 81.2
CAN.G22.25 Capsicum annuum HOM05D001890 ORTHO05D003442 5.8e-06 54.7 29 86.2
Pp3c15_23860 Physcomitrium patens HOM05D001890 ORTHO05D003442 5.8e-06 54.7 83 39.8
Nitab4.5_0001918g0040 Nicotiana tabacum HOM05D001890 ORTHO05D003442 7.6e-06 54.3 71 43.7
Atru.chr8.1302 Acer truncatum HOM05D001890 ORTHO05D003442 1.0e-05 53.9 29 82.8
SGA_v2.0_scaffold31G12814 Striga asiatica HOM05D001890 ORTHO05D003442 1.0e-05 53.9 29 79.3


User provided reference genes

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