Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M7PE33 Arachis hypogaea HOM05D040116 ORTHO05D009646 9.6e-130 466.8 238 100.0
arahy.Tifrunner.gnm1.ann1.FDP8U9 Arachis hypogaea HOM05D040116 ORTHO05D009646 1.8e-91 339.7 272 69.9
arahy.Tifrunner.gnm1.ann1.511LEY Arachis hypogaea HOM05D040116 ORTHO05D085297 2.0e-66 256.5 134 93.3
arahy.Tifrunner.gnm1.ann1.V659E7 Arachis hypogaea HOM05D000230 ORTHO05D000176 1.2e-18 97.8 49 91.8
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 5.8e-18 95.5 117 52.1
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 5.8e-18 95.5 117 52.1
Ca_17639_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 8.4e-17 91.7 49 83.7
Glyma.05G191600 Glycine max HOM05D000230 ORTHO05D000176 3.2e-16 89.7 44 88.6
Glyma.08G156800 Glycine max HOM05D000230 ORTHO05D000176 3.2e-16 89.7 44 88.6
Medtr8g093630 Medicago truncatula HOM05D000230 ORTHO05D000176 5.4e-16 89.0 44 88.6
Psat5g062520 Pisum sativum HOM05D000230 ORTHO05D000176 1.6e-15 87.4 44 86.4
Glyma.04G213100 Glycine max HOM05D000230 ORTHO05D000176 2.1e-15 87.0 44 84.1
Ca_16943_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 2.7e-15 86.7 44 86.4
Ca_16962_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 2.7e-15 86.7 44 86.4
TPR.G8157 Trifolium pratense HOM05D000230 ORTHO05D000176 2.7e-15 86.7 85 54.1
arahy.Tifrunner.gnm1.ann1.B771QR Arachis hypogaea HOM05D000230 ORTHO05D000176 3.5e-15 86.3 61 65.6
arahy.Tifrunner.gnm1.ann1.YYM7FJ Arachis hypogaea HOM05D000230 ORTHO05D000176 3.5e-15 86.3 61 65.6
arahy.Tifrunner.gnm1.ann1.JS5KS9 Arachis hypogaea HOM05D000230 ORTHO05D000176 4.6e-15 85.9 40 97.5
Lj1g0014162 Lotus japonicus HOM05D000230 ORTHO05D000176 4.6e-15 85.9 44 84.1
MBI15_g43502_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 7.9e-15 85.1 44 81.8
Oeu004247.1 Olea europaea HOM05D000230 ORTHO05D000176 7.9e-15 85.1 49 71.4
Psat7g046280 Pisum sativum HOM05D000230 ORTHO05D000176 7.9e-15 85.1 44 84.1
ClCG02G000530 Citrullus lanatus HOM05D000230 ORTHO05D000176 1.3e-14 84.3 44 79.5
VMungo1309G2269 Vigna mungo HOM05D000230 ORTHO05D000176 1.8e-14 84.0 44 81.8
CSS0021510 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 2.3e-14 83.6 44 77.3
Medtr3g096200 Medicago truncatula HOM05D000230 ORTHO05D000176 2.3e-14 83.6 44 84.1
SalBow1G4131 Salvia bowleyana HOM05D000230 ORTHO05D000176 2.3e-14 83.6 49 75.5
Ciclev10000018m.g Citrus clementina HOM05D000230 ORTHO05D000176 3.0e-14 83.2 44 77.3
CsaV3_2G018300 Cucumis sativus L. HOM05D000230 ORTHO05D000176 3.0e-14 83.2 44 77.3
ATR0184G033 Amborella trichopoda HOM05D000230 ORTHO05D000176 3.9e-14 82.8 44 77.3
arahy.Tifrunner.gnm1.ann1.4YM5KJ Arachis hypogaea HOM05D000230 ORTHO05D000176 3.9e-14 82.8 40 90.0
FvH4_1g24300 Fragaria vesca HOM05D000230 ORTHO05D000176 3.9e-14 82.8 44 77.3
CAN.G652.13 Capsicum annuum HOM05D000230 ORTHO05D000176 5.1e-14 82.4 44 81.8
Dinv24353 Davidia involucrata HOM05D000230 ORTHO05D000176 5.1e-14 82.4 45 75.6
PSO541G0109 Papaver somniferum HOM05D000230 ORTHO05D000176 5.1e-14 82.4 44 77.3
PSO675G2931 Papaver somniferum HOM05D000230 ORTHO05D000176 5.1e-14 82.4 44 77.3
GSVIVG01026489001 Vitis vinifera HOM05D000230 ORTHO05D000176 5.1e-14 82.4 63 57.1
Lalb_Chr23g0272591 Lupinus albus HOM05D000230 ORTHO05D000176 6.7e-14 82.0 42 83.3
Oeu050136.1 Olea europaea HOM05D000230 ORTHO05D000176 6.7e-14 82.0 45 73.3
Sabra05G0050100 Salix brachista HOM05D000230 ORTHO05D000176 6.7e-14 82.0 45 73.3
SGA_v2.0_scaffold289G47260 Striga asiatica HOM05D000230 ORTHO05D000176 6.7e-14 82.0 58 65.5
Actinidia06625 Actinidia chinensis HOM05D000230 ORTHO05D000176 8.7e-14 81.6 90 48.9
Cfa002887 Carpinus fangiana HOM05D000230 ORTHO05D000176 8.7e-14 81.6 45 73.3
MELO3C023241.2 Cucumis melo HOM05D000230 ORTHO05D000176 8.7e-14 81.6 44 75.0
MELO3C023251.2 Cucumis melo HOM05D000230 ORTHO05D000176 8.7e-14 81.6 44 75.0
CsaV3_2G018230 Cucumis sativus L. HOM05D000230 ORTHO05D000176 8.7e-14 81.6 44 75.0
TPR.G37378 Trifolium pratense HOM05D000230 ORTHO05D000176 8.7e-14 81.6 44 81.8
TAR628G0760 Trochodendron aralioides HOM05D000230 ORTHO05D000176 8.7e-14 81.6 44 75.0
vmacro18666 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 8.7e-14 81.6 49 71.4
Aqoxy2G01644 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 1.1e-13 81.3 77 51.9
CANSAT01G0637 Cannabis sativa HOM05D000230 ORTHO05D000176 1.1e-13 81.3 44 75.0
CiPaw.03G122400 Carya illinoinensis HOM05D000230 ORTHO05D000176 1.1e-13 81.3 44 75.0
QL06p028617 Quercus lobata HOM05D000230 ORTHO05D000176 1.1e-13 81.3 44 75.0
RcHm_v2.0_Chr2g0120781 Rosa chinensis HOM05D000230 ORTHO05D000176 1.5e-13 80.9 44 75.0
Solyc11g005980.3 Solanum lycopersicum HOM05D000230 ORTHO05D000176 1.5e-13 80.9 44 79.5
Sopen11g001920 Solanum pennellii HOM05D000230 ORTHO05D000176 1.5e-13 80.9 44 79.5
TAR381G0447 Trochodendron aralioides HOM05D000230 ORTHO05D000176 1.5e-13 80.9 44 75.0
EL10Ac6g15312 Beta vulgaris HOM05D000230 ORTHO05D000176 1.9e-13 80.5 45 73.3
Duzib187G0485 Durio zibethinus HOM05D000230 ORTHO05D000176 1.9e-13 80.5 44 75.0
Lalb_Chr11g0068401 Lupinus albus HOM05D000230 ORTHO05D000176 2.5e-13 80.1 44 84.1
Potri.005G058300 Populus trichocarpa HOM05D000230 ORTHO05D000176 2.5e-13 80.1 44 72.7
SGA_v2.0_scaffold370G50126 Striga asiatica HOM05D000230 ORTHO05D000176 2.5e-13 80.1 49 71.4
THA.LOC104807157 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 2.5e-13 80.1 63 55.6
Aqoxy7G03480 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 4.3e-13 79.3 63 58.7
Nitab4.5_0000856g0120 Nicotiana tabacum HOM05D000230 ORTHO05D000176 5.6e-13 79.0 44 77.3
Nitab4.5_0010049g0010 Nicotiana tabacum HOM05D000230 ORTHO05D000176 5.6e-13 79.0 44 77.3
SGA_v2.0_scaffold41G15755 Striga asiatica HOM05D000230 ORTHO05D000176 5.6e-13 79.0 79 53.2
Thecc.01G131200 Theobroma cacao HOM05D000230 ORTHO05D000176 5.6e-13 79.0 44 72.7
SHI11473 Sapria himalayana HOM05D000230 ORTHO05D000176 7.4e-13 78.6 44 72.7
Lj4C844G3 Lonicera japonica HOM05D000230 ORTHO05D000176 9.6e-13 78.2 45 73.3
Atru.chr4.1976 Acer truncatum HOM05D000230 ORTHO05D000176 1.3e-12 77.8 44 72.7
Lj4g0022892 Lotus japonicus HOM05D000230 ORTHO05D000176 1.3e-12 77.8 44 79.5
Peaxi162Scf00183g00421 Petunia axillaris HOM05D000230 ORTHO05D000176 1.3e-12 77.8 44 75.0
PGR119G1551 Punica granatum HOM05D000230 ORTHO05D000176 1.3e-12 77.8 44 75.0
TWI79G1186 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 2.1e-12 77.0 42 76.2
Carub.0003s2817 Capsella rubella HOM05D000230 ORTHO05D000176 2.8e-12 76.6 44 75.0
AL3G45540 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 72.7
AT2G13680 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 72.7
CARHR104750 Cardamine hirsuta HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 72.7
Gohir.A10G156100 Gossypium hirsutum HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 72.7
Gorai.011G120300 Gossypium raimondii HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 72.7
MD02G1211500 Malus domestica HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 75.0
Prupe.4G271000 Prunus persica HOM05D000230 ORTHO05D000176 3.7e-12 76.3 44 75.0
Hund04407 Selenicereus undatus HOM05D000230 ORTHO05D000176 3.7e-12 76.3 45 68.9
Ah.02g121440 Amaranthus hybridus HOM05D000230 ORTHO05D000176 4.8e-12 75.9 44 70.5
HPP92_010433 Vanilla planifolia HOM05D000230 ORTHO05D000176 4.8e-12 75.9 44 75.0
HPP92_017512 Vanilla planifolia HOM05D000230 ORTHO05D000176 4.8e-12 75.9 56 62.5
Cc07_g18440 Coffea canephora HOM05D000230 ORTHO05D000176 6.2e-12 75.5 44 72.7
VMungo0251G2149 Vigna mungo HOM05D000230 ORTHO05D000176 6.2e-12 75.5 44 75.0
BcaB02g11528 Brassica carinata HOM05D000230 ORTHO05D000176 8.1e-12 75.1 45 68.9
A09p10430 Brassica napus HOM05D000230 ORTHO05D000176 8.1e-12 75.1 45 68.9
C09p12370 Brassica napus HOM05D000230 ORTHO05D000176 8.1e-12 75.1 45 68.9
BraA09t36689Z Brassica rapa HOM05D000230 ORTHO05D000176 8.1e-12 75.1 45 68.9
Migut.H00724 Erythranthe guttata HOM05D000230 ORTHO05D000176 8.1e-12 75.1 44 72.7
HanXRQChr09g0258671 Helianthus annuus HOM05D000230 ORTHO05D000176 8.1e-12 75.1 44 75.0
AUR62003558 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.1e-11 74.7 44 70.5
Manes.12G155300 Manihot esculenta HOM05D000230 ORTHO05D000176 1.1e-11 74.7 40 75.0
COL.COLO4_35732 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.4e-11 74.3 44 70.5
Sed0007581 Sechium edule HOM05D000230 ORTHO05D000176 1.4e-11 74.3 44 70.5
Cpa.g.sc42.151 Carica papaya HOM05D000230 ORTHO05D000176 1.8e-11 73.9 44 70.5
FAN23G0965 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.8e-11 73.9 40 75.0
FAN23G2391 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.8e-11 73.9 40 75.0
FAN26G0885 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.8e-11 73.9 40 75.0
Hma1.2p1_0476F.1_g160885 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 1.8e-11 73.9 43 72.1
Hund12766 Selenicereus undatus HOM05D000230 ORTHO05D000176 1.8e-11 73.9 44 68.2
Os06g0182300 Oryza sativa ssp. japonica HOM05D000230 ORTHO05D000176 2.4e-11 73.6 63 58.7
AUR62017872 Chenopodium quinoa HOM05D000230 ORTHO05D000176 3.1e-11 73.2 44 68.2
Oeu037822.1 Olea europaea HOM05D000230 ORTHO05D000176 3.1e-11 73.2 40 72.5
Sc03g0006030 Simmondsia chinensis HOM05D000230 ORTHO05D000176 3.1e-11 73.2 44 68.2
HPP92_010395 Vanilla planifolia HOM05D000230 ORTHO05D000176 4.0e-11 72.8 87 46.0
Migut.L00886 Erythranthe guttata HOM05D000230 ORTHO05D000176 5.3e-11 72.4 44 72.7
FAN28G0249 Fragaria x ananassa HOM05D000230 ORTHO05D000176 5.3e-11 72.4 40 72.5
vmacro12807 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 5.3e-11 72.4 123 38.2
Eucgr.I00208 Eucalyptus grandis HOM05D000230 ORTHO05D000176 6.9e-11 72.0 63 54.0
Gohir.D10G109300 Gossypium hirsutum HOM05D000230 ORTHO05D000176 9.0e-11 71.6 44 68.2
Gorai.011G119900 Gossypium raimondii HOM05D000230 ORTHO05D000176 9.0e-11 71.6 44 68.2
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 1.2e-10 71.2 57 66.7
Thhalv10022518m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.2e-10 71.2 44 63.6
BcaC04g23077 Brassica carinata HOM05D000230 ORTHO05D000176 2.0e-10 70.5 44 65.9
BolC9t54131H Brassica oleracea HOM05D000230 ORTHO05D000176 2.0e-10 70.5 44 65.9
PSO339G5013 Papaver somniferum HOM05D000230 ORTHO05D000176 2.0e-10 70.5 44 68.2
PSO384G4929 Papaver somniferum HOM05D000230 ORTHO05D000176 2.0e-10 70.5 44 68.2
Gohir.A10G156400 Gossypium hirsutum HOM05D000230 ORTHO05D000176 3.4e-10 69.7 44 65.9
Lalb_Chr07g0184431 Lupinus albus HOM05D000230 ORTHO05D000176 3.4e-10 69.7 44 72.7
Sp3g27070 Schrenkiella parvula HOM05D000230 ORTHO05D000176 4.5e-10 69.3 44 59.1
Haze_25227 Corylus avellana HOM05D000230 ORTHO05D000176 7.6e-10 68.6 40 67.5
Rhsim10G0135300 Rhododendron simsii HOM05D000230 ORTHO05D000176 7.6e-10 68.6 47 63.8
ECA234G3310 Erigeron canadensis HOM05D000230 ORTHO05D000176 1.0e-09 68.2 44 65.9
arahy.Tifrunner.gnm1.ann1.A47W8V Arachis hypogaea HOM05D000619 ORTHO05D012567 1.7e-09 67.4 81 51.9
MD01G1004000 Malus domestica HOM05D000230 ORTHO05D000176 1.7e-09 67.4 48 62.5
PSO135G0764 Papaver somniferum HOM05D000230 ORTHO05D000176 1.7e-09 67.4 44 68.2
arahy.Tifrunner.gnm1.ann1.SX799G Arachis hypogaea HOM05D000660 ORTHO05D000766 3.8e-09 66.2 55 61.8
SEGI_06678 Sequoiadendron giganteum HOM05D000230 ORTHO05D000176 1.4e-08 64.3 63 52.4
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 2.5e-08 63.5 44 65.9
Mapoly0183s0015 Marchantia polymorpha HOM05D000230 ORTHO05D000176 4.2e-08 62.8 44 61.4
DCAR_014339 Daucus carota HOM05D000230 ORTHO05D000176 1.2e-07 61.2 45 57.8
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 4.6e-07 59.3 44 63.6
Lsat_1_v5_gn_2_64560 Lactuca sativa HOM05D000230 ORTHO05D000176 1.3e-06 57.8 44 61.4
Aa31LG8G12320 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.3e-06 57.0 40 60.0
Nitab4.5_0004288g0040 Nicotiana tabacum HOM05D000230 ORTHO05D000176 8.7e-06 55.1 76 42.1


User provided reference genes

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