Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 3.6e-129 464.9 234 100.0
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 1.5e-122 443.0 234 94.4
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 7.8e-92 340.9 244 73.8
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 3.3e-90 335.5 239 72.8
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 2.9e-86 322.4 213 75.6
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 8.4e-86 320.9 214 76.6
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 1.4e-85 320.1 213 77.0
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.6e-84 316.6 240 69.2
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 6.6e-83 311.2 213 74.6
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 2.1e-81 306.2 232 70.3
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 4.9e-78 295.0 239 64.9
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 8.7e-75 284.3 232 62.5
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 2.1e-73 279.6 238 61.3
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 1.8e-72 276.6 234 62.4
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 5.3e-72 275.0 189 69.8
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 2.2e-70 269.6 200 66.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 4.9e-70 268.5 228 58.3
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.1e-69 267.3 202 63.4
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 3.2e-69 265.8 227 60.8
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 7.1e-69 264.6 188 64.9
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 9.3e-69 264.2 242 56.2
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.3e-69 264.2 228 57.0
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.6e-68 263.5 225 58.2
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 2.1e-68 263.1 180 66.1
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 4.6e-68 261.9 174 67.2
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 4.6e-68 261.9 180 65.0
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 1.3e-67 260.4 200 62.0
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 2.3e-67 259.6 237 56.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 3.0e-67 259.2 195 63.1
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 5.1e-67 258.5 216 58.3
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 8.7e-67 257.7 192 63.0
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 8.7e-67 257.7 192 62.5
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.1e-66 257.3 237 56.1
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 1.5e-66 256.9 239 55.2
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 2.5e-66 256.1 237 56.1
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 5.6e-66 255.0 175 66.3
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 7.4e-66 254.6 213 56.8
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 9.6e-66 254.2 192 61.5
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 2.1e-65 253.1 226 57.1
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 3.7e-65 252.3 196 62.8
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.7e-65 252.3 176 67.6
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 6.2e-65 251.5 190 60.0
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 6.2e-65 251.5 188 63.8
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 2.4e-64 249.6 223 55.6
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.4e-64 249.6 179 67.6
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 3.1e-64 249.2 203 58.1
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 4.0e-64 248.8 216 54.6
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 5.3e-64 248.4 177 64.4
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 5.3e-64 248.4 169 68.0
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 6.9e-64 248.1 233 55.4
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 3.4e-63 245.7 220 57.7
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 5.8e-63 245.0 227 55.9
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 7.6e-63 244.6 213 56.8
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 1.7e-62 243.4 175 68.0
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 2.2e-62 243.0 188 58.5
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.9e-62 241.9 211 54.0
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.1e-61 240.7 168 63.1
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.1e-61 240.7 182 61.0
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.4e-61 240.4 169 65.7
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.9e-61 240.0 239 50.6
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 3.2e-61 239.2 230 57.4
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 4.2e-61 238.8 219 55.7
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 9.3e-61 237.7 190 56.3
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 1.6e-60 236.9 174 61.5
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.1e-60 236.5 230 56.1
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 2.7e-60 236.1 223 52.9
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 4.6e-60 235.3 194 55.2
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.0e-59 234.2 225 53.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 1.1e-58 230.7 199 53.3
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.9e-58 229.9 180 57.2
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.9e-58 229.9 176 56.8
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.9e-58 229.9 176 56.8
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.5e-58 229.6 223 48.9
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 4.3e-58 228.8 215 49.8
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.6e-57 226.9 219 51.6
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.6e-57 226.9 239 47.7
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.6e-57 226.9 156 65.4
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 8.2e-57 224.6 180 55.6
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 8.2e-57 224.6 180 55.6
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 1.1e-56 224.2 180 55.6
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 4.1e-56 222.2 175 56.0
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 5.3e-56 221.9 180 55.0
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 4.5e-55 218.8 178 57.3
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 5.9e-55 218.4 178 57.3
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 1.0e-54 217.6 215 48.4
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 3.8e-54 215.7 179 68.2
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 8.5e-54 214.5 160 65.6
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 7.2e-53 211.5 155 60.0
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.8e-51 206.8 190 55.8
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 2.5e-50 203.0 224 46.9
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 3.2e-45 186.0 214 45.3
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.0e-43 181.0 143 62.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 2.6e-39 166.4 215 41.4
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 4.5e-39 165.6 139 61.2
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.8e-35 153.7 155 54.8
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 8.8e-35 151.4 140 55.0
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 6.3e-33 145.2 132 55.3
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.2e-28 131.0 85 76.5
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 6.1e-28 128.6 95 69.5
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 2.3e-27 126.7 108 53.7
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.2e-26 124.4 242 31.4
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 2.2e-25 120.2 138 39.9
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.2e-22 110.2 70 61.4
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 3.2e-21 106.3 185 36.8
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.2e-20 104.4 202 32.2
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.1e-20 103.6 70 58.6
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 2.7e-20 103.2 114 52.6
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 3.0e-19 99.8 176 30.1
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 3.4e-18 96.3 174 32.2
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 9.8e-18 94.7 173 31.2
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.3e-17 94.4 54 70.4
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 4.8e-17 92.4 202 29.2
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 4.8e-17 92.4 163 32.5
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 4.5e-15 85.9 207 27.1
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 7.7e-15 85.1 152 28.3
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.7e-14 84.0 118 45.8
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 2.3e-14 83.6 200 29.5
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 8.6e-14 81.6 229 27.1
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 8.6e-14 81.6 141 30.5
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 1.1e-13 81.3 152 27.6
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.5e-13 80.9 136 33.8
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 3.2e-13 79.7 228 25.0
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 4.2e-13 79.3 217 24.4
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 2.1e-12 77.0 68 47.1
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 4.7e-12 75.9 149 28.9
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 8.0e-12 75.1 148 30.4
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.4e-11 74.3 135 29.6
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.8e-11 73.9 135 29.6
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 1.8e-11 73.9 148 30.4
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 3.0e-11 73.2 164 27.4
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 5.2e-11 72.4 164 28.0
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 1.5e-10 70.9 143 25.9
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 9.8e-10 68.2 209 24.4
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 1.3e-09 67.8 152 25.7
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 1.3e-09 67.8 167 25.1
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.7e-09 67.4 206 26.7
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 4.9e-09 65.9 44 63.6
MSTRG.22201 Avicennia marina HOM05D008077 ORTHO05D010221 6.3e-09 65.5 144 27.1
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 8.3e-09 65.1 126 25.4
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 5.4e-08 62.4 148 28.4
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 1.6e-07 60.8 206 23.8
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.6e-07 60.8 134 28.4
Potri.005G149500 Populus trichocarpa HOM05D008077 ORTHO05D010221 4.5e-07 59.3 148 27.0
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.8e-06 56.2 51 54.9
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 6.6e-06 55.5 149 24.8
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 8.6e-06 55.1 203 25.6


User provided reference genes

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