Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 1.3e-111 406.4 207 100.0
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 2.2e-45 186.4 198 58.1
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.8e-44 183.3 197 55.8
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 3.1e-44 182.6 198 57.6
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 4.1e-44 182.2 198 56.6
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 9.2e-44 181.0 199 55.8
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 1.6e-43 180.3 201 54.2
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 1.7e-42 176.8 208 56.2
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 3.8e-42 175.6 203 55.2
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 1.2e-40 170.6 203 54.2
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 2.8e-40 169.5 189 56.1
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 6.1e-40 168.3 195 53.3
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 6.1e-40 168.3 199 50.8
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 6.1e-40 168.3 199 50.8
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 2.3e-39 166.4 213 53.1
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 2.3e-39 166.4 203 49.8
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 3.0e-39 166.0 206 51.0
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 5.2e-39 165.2 203 52.7
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 6.8e-39 164.9 199 51.3
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 8.9e-39 164.5 203 47.3
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 8.9e-39 164.5 203 54.7
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 2.0e-38 163.3 198 48.5
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 4.4e-38 162.2 197 52.3
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 2.2e-37 159.8 199 51.3
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 2.9e-37 159.5 199 48.7
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 2.9e-37 159.5 197 49.7
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 3.7e-37 159.1 199 50.3
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 4.9e-37 158.7 211 51.7
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 1.4e-36 157.1 198 51.0
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 1.9e-36 156.8 199 50.8
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 2.4e-36 156.4 204 52.5
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 3.2e-36 156.0 204 51.0
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 1.6e-35 153.7 168 54.8
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 6.0e-35 151.8 199 47.2
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.3e-34 150.6 199 47.7
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 1.3e-34 150.6 209 48.8
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 3.0e-34 149.4 214 48.6
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 3.0e-34 149.4 205 47.3
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 6.6e-34 148.3 203 51.2
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 6.6e-34 148.3 205 46.3
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 6.6e-34 148.3 201 48.3
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 5.6e-33 145.2 197 46.2
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 7.3e-33 144.8 201 45.8
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 9.5e-33 144.4 199 46.2
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 1.2e-32 144.1 201 47.3
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 1.6e-32 143.7 209 49.8
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 1.6e-32 143.7 196 49.0
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 3.6e-32 142.5 197 47.7
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 4.7e-32 142.1 201 47.8
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 6.2e-32 141.7 191 45.5
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 1.1e-31 141.0 199 47.7
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 1.8e-31 140.2 190 47.4
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 2.3e-31 139.8 201 47.3
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 5.2e-31 138.7 201 49.3
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 6.8e-31 138.3 197 48.7
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 1.5e-30 137.1 193 49.7
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 5.8e-30 135.2 193 49.2
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 7.5e-30 134.8 199 47.2
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 1.3e-29 134.0 175 49.1
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 3.7e-29 132.5 207 42.0
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 5.4e-28 128.6 189 48.1
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 9.2e-28 127.9 182 45.6
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 4.6e-27 125.6 157 47.8
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 7.8e-27 124.8 187 43.9
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 6.6e-26 121.7 201 43.3
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 9.5e-25 117.9 210 39.0
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 2.1e-24 116.7 209 39.2
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 1.4e-23 114.0 209 38.8
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 4.0e-23 112.5 214 38.8
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 8.9e-23 111.3 195 38.5
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 7.5e-22 108.2 191 40.8
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 1.3e-21 107.5 209 37.3
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 1.3e-21 107.5 209 37.3
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 1.3e-21 107.5 209 37.3
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 1.7e-21 107.1 135 51.1
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 2.9e-21 106.3 209 36.8
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 4.9e-21 105.5 209 36.8
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 4.9e-21 105.5 209 36.8
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 1.6e-19 100.5 209 36.8
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 2.7e-19 99.8 212 36.3
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 2.1e-16 90.1 205 36.6
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 5.2e-15 85.5 169 39.6
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 4.9e-13 79.0 130 40.0
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 2.1e-11 73.6 206 33.0


User provided reference genes

Program Settings