Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.9e-124 449.1 218 100.0
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 4.7e-123 444.5 218 98.6
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.7e-102 375.6 213 82.6
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 2.3e-101 372.5 213 81.7
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 3.9e-101 371.7 213 81.7
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 8.6e-101 370.5 213 81.2
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 7.3e-100 367.5 210 81.4
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.8e-99 365.5 218 78.9
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 6.2e-99 364.4 218 78.9
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.8e-98 362.8 213 79.3
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.1e-95 353.6 218 75.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.9e-95 352.8 213 77.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 2.4e-95 352.4 213 77.0
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 5.4e-95 351.3 218 75.7
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.2e-94 350.1 204 84.8
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 7.3e-92 340.9 218 73.4
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.8e-91 339.0 218 70.6
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.8e-91 339.0 218 70.6
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.8e-91 339.0 218 70.6
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.6e-91 338.6 214 72.0
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 4.7e-91 338.2 213 71.4
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 4.7e-91 338.2 219 72.6
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.4e-90 336.7 219 71.7
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.8e-90 336.3 217 68.7
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.8e-90 336.3 218 70.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 4.0e-90 335.1 210 72.9
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 4.0e-90 335.1 217 68.7
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 4.0e-90 335.1 217 69.1
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 4.0e-90 335.1 215 70.7
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 5.2e-90 334.7 216 71.3
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 6.8e-90 334.3 218 68.8
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.2e-89 333.6 218 67.9
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.5e-89 333.2 210 72.4
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 3.4e-89 332.0 210 70.5
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 9.8e-89 330.5 218 67.9
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.2e-88 329.3 210 70.0
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.9e-88 328.9 218 66.1
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.7e-88 328.6 212 69.8
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.7e-88 328.6 217 68.7
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 4.9e-88 328.2 210 70.5
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 4.9e-88 328.2 216 68.1
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 2.4e-87 325.9 218 68.3
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 4.1e-87 325.1 212 67.5
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 4.1e-87 325.1 217 70.0
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 4.1e-87 325.1 212 67.9
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 5.4e-87 324.7 217 66.4
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 7.1e-87 324.3 218 67.4
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 9.2e-87 323.9 212 67.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 2.7e-86 322.4 212 67.5
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 6.0e-86 321.2 217 67.3
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 6.0e-86 321.2 212 66.5
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 7.8e-86 320.9 212 67.0
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.7e-85 319.7 218 67.4
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.7e-85 319.7 212 66.0
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 67.9
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 67.9
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 67.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.3e-85 319.3 218 66.1
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 3.0e-85 318.9 217 64.5
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 3.0e-85 318.9 218 66.1
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 66.5
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 5.1e-85 318.2 218 67.0
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 8.6e-85 317.4 215 63.3
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.5e-84 316.6 216 65.3
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.5e-84 315.8 211 65.9
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.5e-84 315.8 218 67.4
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.3e-84 315.5 218 66.1
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.3e-84 315.1 215 65.6
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.6e-84 314.7 248 62.1
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 1.2e-83 313.5 212 64.2
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.6e-83 313.2 212 65.1
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.8e-83 312.4 217 66.4
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.6e-83 312.0 218 66.1
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.1e-82 310.5 213 68.5
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.8e-82 309.7 214 65.9
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 2.3e-82 309.3 216 63.9
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.3e-82 309.3 218 65.1
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 3.1e-82 308.9 218 65.1
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 3.1e-82 308.9 210 68.6
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 4.0e-82 308.5 213 68.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.2e-81 307.0 210 68.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 1.5e-81 306.6 210 68.6
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.6e-81 305.8 218 63.3
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.4e-81 305.4 208 65.9
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.8e-81 304.7 212 64.2
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 9.9e-81 303.9 215 64.7
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.7e-80 303.1 218 62.8
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.4e-80 300.8 210 62.9
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.1e-79 298.5 212 62.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.1e-79 298.5 218 64.2
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 7.1e-79 297.7 216 63.9
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.1e-76 290.4 216 61.6
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 6.2e-75 284.6 211 62.1
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.2e-75 284.6 216 62.0
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 6.9e-74 281.2 215 59.1
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 9.9e-73 277.3 211 60.2
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 4.9e-72 275.0 192 60.9
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 4.9e-72 275.0 213 58.2
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-71 273.5 184 67.9
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 7.1e-71 271.2 211 59.2
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.7e-70 269.2 198 62.6
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.7e-70 269.2 213 61.0
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.5e-68 262.7 208 60.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.6e-68 261.5 198 62.1
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 7.3e-68 261.2 193 62.7
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 3.6e-67 258.8 174 67.2
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.5e-65 253.4 204 55.4
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.4e-65 252.3 206 53.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 3.2e-63 245.7 206 53.9
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 4.2e-63 245.4 222 55.0
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 7.1e-63 244.6 222 54.5
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.5e-62 242.3 166 68.1
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.5e-60 236.9 211 49.8
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.4e-58 230.3 222 51.8
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 7.6e-57 224.6 189 56.6
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 9.9e-57 224.2 152 66.4
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 1.9e-55 219.9 147 67.3
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.8e-53 213.4 188 53.2
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.0e-53 212.6 231 50.6
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.1e-52 210.7 146 65.1
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 7.4e-52 208.0 140 67.9
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.4e-49 199.1 126 69.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.2e-48 196.4 168 55.4
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.9e-48 195.3 188 50.0
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.1e-47 194.1 199 50.3
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 3.5e-46 189.1 207 44.9
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.9e-46 188.0 222 46.8
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 3.3e-36 156.0 110 66.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.3e-36 155.6 109 66.1
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 8.8e-29 131.3 208 35.1
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 6.9e-26 121.7 230 32.2
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.0e-25 120.2 210 36.7
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.6e-22 109.4 71 69.0
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 4.7e-22 109.0 77 54.5
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 7.9e-22 108.2 138 44.9
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.5e-20 104.0 77 62.3
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.7e-19 100.5 68 61.8
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.7e-19 100.5 208 32.2
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-18 97.8 112 44.6
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-18 97.8 112 44.6
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.8e-18 97.1 211 28.9
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 3.1e-18 96.3 47 93.6
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 7.0e-18 95.1 112 42.9
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-14 84.3 84 48.8
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 1.0e-13 81.3 178 30.3
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.3e-12 76.3 51 60.8
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.8e-11 73.2 201 26.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.8e-11 72.4 50 60.0
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.3e-10 68.9 108 38.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 7.0e-10 68.6 216 25.0
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 1.6e-09 67.4 168 28.6
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 2.2e-08 63.5 40 67.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 1.5e-07 60.8 84 39.3
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 4.2e-07 59.3 84 38.1


User provided reference genes

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