Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M6DWYI Arachis hypogaea HOM05D000644 ORTHO05D018524 3.5e-71 271.6 142 100.0
arahy.Tifrunner.gnm1.ann1.34G0XH Arachis hypogaea HOM05D000644 ORTHO05D000504 4.6e-55 218.0 125 92.0
arahy.Tifrunner.gnm1.ann1.V3SVTV Arachis hypogaea HOM05D000644 ORTHO05D000504 4.4e-45 184.9 108 91.7
arahy.Tifrunner.gnm1.ann1.H7HAX3 Arachis hypogaea HOM05D000644 ORTHO05D000504 2.8e-44 182.2 102 90.2
Glyma.09G129700 Glycine max HOM05D000644 ORTHO05D000504 1.8e-30 136.3 127 64.6
Lj2g0013838 Lotus japonicus HOM05D000644 ORTHO05D000504 1.8e-30 136.3 130 60.0
Glyma.16G177500 Glycine max HOM05D000644 ORTHO05D000504 4.4e-29 131.7 131 60.3
Ca_26607_v3 Cicer arietinum L. HOM05D000644 ORTHO05D000504 5.7e-29 131.3 127 59.8
VMungo0464G1835 Vigna mungo HOM05D000644 ORTHO05D000504 2.2e-28 129.4 134 59.7
Medtr6g052300 Medicago truncatula HOM05D000644 ORTHO05D000504 4.8e-28 128.3 121 60.3
Psat3g167920 Pisum sativum HOM05D000644 ORTHO05D000504 1.4e-27 126.7 143 54.5
Lalb_Chr19g0130581 Lupinus albus HOM05D000644 ORTHO05D000504 9.1e-27 124.0 130 58.5
Phvul.004G106300 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 1.6e-26 123.2 131 60.3
Prupe.2G301800 Prunus persica HOM05D000644 ORTHO05D000504 5.2e-14 81.6 150 38.7
Glyma.09G129900 Glycine max HOM05D000644 ORTHO05D000504 1.5e-13 80.1 149 41.6
CiPaw.06G003900 Carya illinoinensis HOM05D000644 ORTHO05D000504 4.4e-13 78.6 143 39.2
QL09p012548 Quercus lobata HOM05D000644 ORTHO05D000504 9.8e-13 77.4 149 37.6
Manes.14G021600 Manihot esculenta HOM05D000644 ORTHO05D000504 1.7e-12 76.6 150 38.0
Lj2g0008327 Lotus japonicus HOM05D000644 ORTHO05D000504 2.8e-12 75.9 149 40.9
Phvul.004G106600 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 3.7e-12 75.5 147 38.8
VMungo0464G0996 Vigna mungo HOM05D000644 ORTHO05D000504 1.4e-11 73.6 149 38.9
TPR.G9172 Trifolium pratense HOM05D000644 ORTHO05D018524 3.1e-11 72.4 85 55.3
Haze_00054 Corylus avellana HOM05D000644 ORTHO05D000504 1.2e-10 70.5 152 35.5
FvH4_7g30340 Fragaria vesca HOM05D000644 ORTHO05D000504 2.0e-10 69.7 144 38.9
FAN03G0294 Fragaria x ananassa HOM05D000644 ORTHO05D000504 2.0e-10 69.7 142 36.6
FAN03G3377 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.0e-10 69.7 142 36.6
FAN06G0407 Fragaria x ananassa HOM05D000644 ORTHO05D000504 2.0e-10 69.7 144 38.9
FAN06G2329 Fragaria x ananassa HOM05D000644 ORTHO05D000504 2.0e-10 69.7 144 38.2
RcHm_v2.0_Chr1g0378481 Rosa chinensis HOM05D000644 ORTHO05D000504 2.0e-10 69.7 143 39.2
FvH4_7g30360 Fragaria vesca HOM05D000644 ORTHO05D000504 2.7e-10 69.3 144 38.2
Medtr7g010900 Medicago truncatula HOM05D000644 ORTHO05D000504 2.7e-10 69.3 133 39.8
arahy.Tifrunner.gnm1.ann1.Q3MUFL Arachis hypogaea HOM05D000644 ORTHO05D000504 3.5e-10 68.9 150 38.7
FAN01G1896 Fragaria x ananassa HOM05D000644 ORTHO05D000504 3.5e-10 68.9 144 38.9
FAN03G0717 Fragaria x ananassa HOM05D000644 ORTHO05D000504 3.5e-10 68.9 144 37.5
FAN10G3256 Fragaria x ananassa HOM05D000644 ORTHO05D000504 3.5e-10 68.9 144 38.2
Rhsim09G0200900 Rhododendron simsii HOM05D000644 ORTHO05D000504 3.5e-10 68.9 133 41.4
FAN01G1321 Fragaria x ananassa HOM05D000644 ORTHO05D000504 4.5e-10 68.6 144 37.5
FAN03G2749 Fragaria x ananassa HOM05D000644 ORTHO05D000504 4.5e-10 68.6 144 38.9
FAN10G1875 Fragaria x ananassa HOM05D000644 ORTHO05D000504 1.0e-09 67.4 144 37.5
MD07G1279700 Malus domestica HOM05D000644 ORTHO05D000504 1.7e-09 66.6 133 39.1
MD01G1209400 Malus domestica HOM05D000644 ORTHO05D000504 2.3e-09 66.2 147 33.3
Manes.12G118200 Manihot esculenta HOM05D000644 ORTHO05D000504 2.3e-09 66.2 133 36.8
HPP92_014499 Vanilla planifolia HOM05D000644 ORTHO05D000504 3.8e-09 65.5 128 35.9
CDE02G1922 Ceratophyllum demersum HOM05D000644 ORTHO05D000504 5.0e-09 65.1 150 34.7
GSVIVG01028842001 Vitis vinifera HOM05D000644 ORTHO05D000504 5.0e-09 65.1 142 38.0
arahy.Tifrunner.gnm1.ann1.5TRY55 Arachis hypogaea HOM05D000644 ORTHO05D000504 8.6e-09 64.3 150 37.3
Rhsim08G0089700 Rhododendron simsii HOM05D000644 ORTHO05D000504 1.1e-08 63.9 138 34.1
Sabra17G0123600 Salix brachista HOM05D000644 ORTHO05D000504 1.1e-08 63.9 128 35.9
QL09p012510 Quercus lobata HOM05D000644 ORTHO05D000504 1.9e-08 63.2 129 35.7
CSS0043125 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 2.5e-08 62.8 150 36.0
Potri.017G147900 Populus trichocarpa HOM05D000644 ORTHO05D000504 3.3e-08 62.4 135 36.3
Nitab4.5_0000776g0040 Nicotiana tabacum HOM05D000644 ORTHO05D000504 5.6e-08 61.6 133 34.6
Zm00001eb403660 Zea mays HOM05D000644 ORTHO05D000504 5.6e-08 61.6 129 35.7
SMO197G0082 Selaginella moellendorffii HOM05D000528 ORTHO05D000999 7.3e-08 61.2 126 34.1
vmacro09810 Vaccinium macrocarpon HOM05D000644 ORTHO05D000504 7.3e-08 61.2 127 37.0
TAR629G1536 Trochodendron aralioides HOM05D000644 ORTHO05D000504 9.5e-08 60.8 150 33.3
Eucgr.K00296 Eucalyptus grandis HOM05D000644 ORTHO05D000504 1.6e-07 60.1 126 34.1
Atru.chr1.343 Acer truncatum HOM05D000644 ORTHO05D000504 2.8e-07 59.3 132 38.6
Atru.ctg97_1.39 Acer truncatum HOM05D000644 ORTHO05D000504 2.8e-07 59.3 132 38.6
Ciclev10006976m.g Citrus clementina HOM05D000644 ORTHO05D000504 2.8e-07 59.3 126 39.7
MBI19_g40270_MAGBIO Magnolia biondii HOM05D000644 ORTHO05D000504 4.7e-07 58.5 127 35.4
Oeu027868.1 Olea europaea HOM05D000644 ORTHO05D000504 4.7e-07 58.5 150 31.3
Hund12200 Selenicereus undatus HOM05D000644 ORTHO05D000504 4.7e-07 58.5 125 36.0
Actinidia16405 Actinidia chinensis HOM05D000644 ORTHO05D000504 6.1e-07 58.2 134 35.8
CSS0047975 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 6.1e-07 58.2 125 33.6
AUR62021109 Chenopodium quinoa HOM05D000644 ORTHO05D000504 6.1e-07 58.2 130 36.2
SMO364G0837 Selaginella moellendorffii HOM05D000644 ORTHO05D000504 6.1e-07 58.2 126 33.3
Thecc.01G077500 Theobroma cacao HOM05D000644 ORTHO05D000504 6.1e-07 58.2 131 37.4
Atru.chr1.344 Acer truncatum HOM05D000644 ORTHO05D000504 8.0e-07 57.8 131 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2312 Anthoceros agrestis HOM05D000644 ORTHO05D000504 8.0e-07 57.8 157 31.2
arahy.Tifrunner.gnm1.ann1.T93CRE Arachis hypogaea HOM05D000644 ORTHO05D000504 8.0e-07 57.8 131 37.4
CAN.G1226.15 Capsicum annuum HOM05D000644 ORTHO05D000504 8.0e-07 57.8 127 34.6
Dinv35261 Davidia involucrata HOM05D000644 ORTHO05D000504 8.0e-07 57.8 190 28.4
Eucgr.A02723 Eucalyptus grandis HOM05D000644 ORTHO05D000504 8.0e-07 57.8 127 34.6
SalBow4G2452 Salvia bowleyana HOM05D000644 ORTHO05D000504 8.0e-07 57.8 125 33.6
Sed0021149 Sechium edule HOM05D000644 ORTHO05D000504 8.0e-07 57.8 133 33.8
Cfa006780 Carpinus fangiana HOM05D000644 ORTHO05D000504 1.0e-06 57.4 133 34.6
Manes.05G159600 Manihot esculenta HOM05D000644 ORTHO05D000504 1.0e-06 57.4 151 33.1
QL09p012570 Quercus lobata HOM05D000644 ORTHO05D000504 1.4e-06 57.0 134 35.1
TPR.G9161 Trifolium pratense HOM05D000644 ORTHO05D000504 1.4e-06 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.AG8N2I Arachis hypogaea HOM05D000644 ORTHO05D000504 1.8e-06 56.6 131 37.4
Oeu005732.2 Olea europaea HOM05D000644 ORTHO05D000504 1.8e-06 56.6 133 34.6
Sc13g0009220 Simmondsia chinensis HOM05D000644 ORTHO05D000504 1.8e-06 56.6 149 33.6
Thecc.01G282800 Theobroma cacao HOM05D000644 ORTHO05D000504 1.8e-06 56.6 129 37.2
MSTRG.8704 Avicennia marina HOM05D000644 ORTHO05D000504 2.3e-06 56.2 126 33.3
Cc02_g02300 Coffea canephora HOM05D000644 ORTHO05D000504 2.3e-06 56.2 140 34.3
DCAR_027149 Daucus carota HOM05D000644 ORTHO05D000504 2.3e-06 56.2 125 35.2
PSO170G2429 Papaver somniferum HOM05D000644 ORTHO05D000504 2.3e-06 56.2 128 39.1
PSO407G0249 Papaver somniferum HOM05D000644 ORTHO05D000504 2.3e-06 56.2 128 39.1
Peaxi162Scf00417g01346 Petunia axillaris HOM05D000644 ORTHO05D000504 2.3e-06 56.2 128 36.7
Phvul.006G197700 Phaseolus vulgaris HOM05D000644 ORTHO05D000504 2.3e-06 56.2 130 33.8
Psat1g212040 Pisum sativum HOM05D000644 ORTHO05D000504 2.3e-06 56.2 135 31.9
Sed0020396 Sechium edule HOM05D000644 ORTHO05D000504 2.3e-06 56.2 126 38.1
TPR.G14195 Trifolium pratense HOM05D000644 ORTHO05D000504 2.3e-06 56.2 127 37.0
Atru.chr3.1071_Atru.chr3.1072 Acer truncatum HOM05D000644 ORTHO05D000504 3.0e-06 55.8 129 35.7
Ca_00198_v3 Cicer arietinum L. HOM05D000644 ORTHO05D000504 3.0e-06 55.8 143 31.5
Ciclev10027239m.g Citrus clementina HOM05D000644 ORTHO05D000504 3.0e-06 55.8 134 32.8
Atru.chr13.479 Acer truncatum HOM05D000644 ORTHO05D000504 4.0e-06 55.5 130 33.1
Aqoxy2G03258 Aquilegia oxysepala HOM05D000644 ORTHO05D000504 4.0e-06 55.5 128 32.0
Migut.F00282 Erythranthe guttata HOM05D000644 ORTHO05D000504 4.0e-06 55.5 125 35.2
Lj8C16G2 Lonicera japonica HOM05D000644 ORTHO05D000504 4.0e-06 55.5 131 32.1
Manes.06G153200 Manihot esculenta HOM05D000644 ORTHO05D000504 4.0e-06 55.5 149 33.6
AT2G14520 Arabidopsis thaliana HOM05D000644 ORTHO05D000504 5.2e-06 55.1 136 33.1
Cfa006112 Carpinus fangiana HOM05D000644 ORTHO05D000504 5.2e-06 55.1 128 36.7
Haze_03979 Corylus avellana HOM05D000644 ORTHO05D000504 5.2e-06 55.1 134 35.1
ECA232G0030 Erigeron canadensis HOM05D000644 ORTHO05D000504 5.2e-06 55.1 125 33.6
Gorai.005G262700 Gossypium raimondii HOM05D000644 ORTHO05D000504 5.2e-06 55.1 135 31.1
Lj4A39T65 Lonicera japonica HOM05D000644 ORTHO05D000504 5.2e-06 55.1 134 33.6
QL02p008612 Quercus lobata HOM05D000644 ORTHO05D000504 5.2e-06 55.1 134 36.6
Actinidia03139 Actinidia chinensis HOM05D000644 ORTHO05D000504 6.8e-06 54.7 147 34.0
arahy.Tifrunner.gnm1.ann1.3P9E70 Arachis hypogaea HOM05D000644 ORTHO05D000504 6.8e-06 54.7 129 36.4
MSTRG.5306 Avicennia marina HOM05D000644 ORTHO05D000504 6.8e-06 54.7 131 33.6
CSS0039719 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 6.8e-06 54.7 136 33.8
CSS0043181 Camellia sinensis var. sinensis HOM05D000644 ORTHO05D000504 6.8e-06 54.7 133 33.1
AUR62030894 Chenopodium quinoa HOM05D000644 ORTHO05D000504 6.8e-06 54.7 136 36.0
MELO3C006957.2 Cucumis melo HOM05D000644 ORTHO05D000504 6.8e-06 54.7 126 38.9
CsaV3_3G045130 Cucumis sativus L. HOM05D000644 ORTHO05D000504 6.8e-06 54.7 138 33.3
Eucgr.I02511 Eucalyptus grandis HOM05D000644 ORTHO05D000504 6.8e-06 54.7 133 29.3
Eucgr.L02046 Eucalyptus grandis HOM05D000644 ORTHO05D000504 6.8e-06 54.7 133 29.3
Glyma.15G061900 Glycine max HOM05D000644 ORTHO05D000504 6.8e-06 54.7 136 30.9
Glyma.15G062100 Glycine max HOM05D000644 ORTHO05D000504 6.8e-06 54.7 128 31.2
Gohir.D02G234700 Gossypium hirsutum HOM05D000644 ORTHO05D000504 6.8e-06 54.7 133 31.6
VMungo0540G0242 Vigna mungo HOM05D000644 ORTHO05D000504 6.8e-06 54.7 128 30.5
Zm00001eb001900 Zea mays HOM05D000644 ORTHO05D000504 6.8e-06 54.7 129 34.9
CiPaw.07G037100 Carya illinoinensis HOM05D000644 ORTHO05D000504 8.9e-06 54.3 135 31.1
Haze_04738 Corylus avellana HOM05D000644 ORTHO05D000504 8.9e-06 54.3 128 36.7
Gohir.A03G213200 Gossypium hirsutum HOM05D000644 ORTHO05D000504 8.9e-06 54.3 133 31.6
Nitab4.5_0000142g0420 Nicotiana tabacum HOM05D000644 ORTHO05D000504 8.9e-06 54.3 136 31.6
Nitab4.5_0006280g0050 Nicotiana tabacum HOM05D000644 ORTHO05D000504 8.9e-06 54.3 129 34.1
Peaxi162Scf00096g01845 Petunia axillaris HOM05D000644 ORTHO05D000504 8.9e-06 54.3 131 33.6


User provided reference genes

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