Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 7.0e-41 170.2 90 100.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-38 162.9 88 96.6
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-38 162.9 88 96.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 3.1e-36 154.8 81 100.0
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 5.1e-31 137.5 90 77.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 4.3e-30 134.4 88 77.3
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 4.3e-30 134.4 88 77.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 1.2e-29 132.9 88 77.3
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.2e-29 132.9 88 77.3
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 3.6e-29 131.3 88 76.1
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 3.6e-29 131.3 87 77.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 4.7e-29 131.0 86 77.9
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.7e-29 131.0 87 75.9
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 6.2e-29 130.6 88 75.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 8.1e-29 130.2 86 79.1
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-28 129.4 72 94.4
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.4e-28 129.4 88 76.1
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.8e-28 129.0 88 73.9
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 4.0e-28 127.9 88 73.9
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 6.8e-28 127.1 88 72.7
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 8.9e-28 126.7 90 72.2
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 1.2e-27 126.3 86 75.6
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 1.5e-27 125.9 88 71.6
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.5e-27 125.9 89 71.9
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.6e-27 125.2 90 71.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.6e-27 125.2 90 70.0
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 3.4e-27 124.8 90 70.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 3.4e-27 124.8 88 72.7
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.4e-27 124.8 88 72.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 4.4e-27 124.4 84 73.8
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.4e-27 124.4 90 70.0
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 5.8e-27 124.0 85 74.1
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 7.5e-27 123.6 85 74.1
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.9e-27 123.2 85 71.8
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 9.9e-27 123.2 85 71.8
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 9.9e-27 123.2 95 70.5
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 9.9e-27 123.2 95 70.5
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 9.9e-27 123.2 86 74.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 9.9e-27 123.2 90 68.9
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.9e-27 123.2 90 68.9
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.9e-27 123.2 90 68.9
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.9e-27 123.2 90 68.9
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 9.9e-27 123.2 86 72.1
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 9.9e-27 123.2 85 74.1
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 9.9e-27 123.2 86 73.3
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.7e-26 122.5 86 73.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 2.2e-26 122.1 85 72.9
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.9e-26 121.7 86 72.1
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 3.7e-26 121.3 88 70.5
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 4.9e-26 120.9 86 70.9
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 4.9e-26 120.9 88 70.5
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 4.9e-26 120.9 79 77.2
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 6.4e-26 120.6 86 73.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 6.4e-26 120.6 85 72.9
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 8.3e-26 120.2 88 69.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.1e-25 119.8 88 70.5
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.4e-25 119.4 86 70.9
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.9e-25 119.0 82 74.4
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.9e-25 119.0 86 70.9
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 2.4e-25 118.6 86 70.9
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 2.4e-25 118.6 86 68.6
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 3.2e-25 118.2 86 68.6
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 4.1e-25 117.9 86 72.1
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 5.4e-25 117.5 85 69.4
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 5.4e-25 117.5 85 69.4
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 5.4e-25 117.5 86 70.9
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 5.4e-25 117.5 80 76.2
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 7.1e-25 117.1 86 69.8
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 7.1e-25 117.1 86 69.8
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 7.1e-25 117.1 86 67.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 9.2e-25 116.7 88 68.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 9.2e-25 116.7 86 68.6
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 1.6e-24 115.9 86 68.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.7e-24 115.2 86 68.6
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.7e-24 115.2 84 69.0
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.7e-24 115.2 86 69.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.5e-24 114.8 86 69.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 4.6e-24 114.4 86 67.4
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 7.8e-24 113.6 85 65.9
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.0e-23 113.2 85 68.2
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.0e-23 113.2 88 67.0
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.3e-23 112.8 79 73.4
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.3e-23 112.8 86 66.3
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.7e-23 112.5 86 68.6
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.7e-23 112.5 85 68.2
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 2.3e-23 112.1 86 67.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.3e-23 112.1 86 67.4
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 2.3e-23 112.1 86 67.4
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.3e-23 112.1 86 67.4
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.3e-23 112.1 86 66.3
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.0e-23 111.7 85 65.9
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.0e-23 111.7 86 67.4
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.0e-23 111.7 86 67.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.0e-23 111.7 86 67.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.0e-23 111.7 79 70.9
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 3.9e-23 111.3 76 75.0
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 5.1e-23 110.9 86 66.3
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 5.1e-23 110.9 86 66.3
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 5.1e-23 110.9 85 67.1
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 6.6e-23 110.5 86 66.3
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 6.6e-23 110.5 85 67.1
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 6.6e-23 110.5 84 67.9
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 8.6e-23 110.2 86 66.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-22 109.8 86 66.3
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-22 109.8 86 66.3
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.1e-22 109.8 86 66.3
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.1e-22 109.8 86 66.3
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.1e-22 109.8 86 66.3
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.5e-22 108.6 86 64.0
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.5e-22 108.6 88 63.6
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.5e-22 108.6 85 63.5
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.6e-22 107.5 86 64.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.2e-21 106.3 86 64.0
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.6e-21 105.9 84 64.3
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.8e-21 105.1 86 62.8
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 6.2e-21 104.0 73 72.6
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.2e-20 100.9 87 56.3
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 6.8e-20 100.5 81 64.2
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 8.9e-20 100.1 85 57.6
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 1.2e-19 99.8 86 61.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.5e-19 99.4 86 61.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.5e-19 99.4 85 57.6
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.5e-19 99.4 85 57.6
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.6e-19 98.6 83 62.7
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 4.4e-19 97.8 79 65.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 7.6e-19 97.1 114 50.9
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.3e-18 96.3 86 55.8
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.7e-18 95.9 85 58.8
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 8.4e-18 93.6 85 56.5
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.4e-17 92.0 86 61.6
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 9.2e-17 90.1 111 50.5
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.1e-16 89.0 119 46.2
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.1e-16 89.0 119 46.2
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.8e-16 87.0 70 64.3
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 5.1e-15 84.3 60 71.7
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.9e-14 82.4 80 55.0
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 4.3e-14 81.3 62 66.1
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 8.1e-13 77.0 58 67.2
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 1.4e-12 76.3 86 50.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.4e-12 75.5 61 67.2
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 4.0e-12 74.7 79 53.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.4e-09 65.5 86 48.8
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 3.0e-07 58.5 41 73.2
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 5.6e-06 54.3 42 61.9


User provided reference genes

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