Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 8.4e-27 122.9 59 100.0
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 9.7e-15 82.8 42 90.5
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 9.7e-15 82.8 42 90.5
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 9.7e-15 82.8 42 90.5
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 9.7e-15 82.8 42 90.5
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 1.7e-14 82.0 42 90.5
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 2.2e-14 81.6 42 88.1
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 2.8e-14 81.3 42 88.1
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 8.2e-14 79.7 42 88.1
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 8.2e-14 79.7 42 88.1
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 8.2e-14 79.7 42 88.1
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 1.4e-13 79.0 42 88.1
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 1.4e-13 79.0 56 73.2
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 1.8e-13 78.6 42 88.1
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 2.4e-13 78.2 42 85.7
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 3.1e-13 77.8 42 85.7
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 3.1e-13 77.8 42 85.7
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 4.1e-13 77.4 42 85.7
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 5.3e-13 77.0 42 85.7
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 5.3e-13 77.0 53 73.6
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 6.9e-13 76.6 42 85.7
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 6.9e-13 76.6 42 83.3
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 6.9e-13 76.6 42 83.3
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 6.9e-13 76.6 42 85.7
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 9.1e-13 76.3 42 85.7
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.2e-12 75.9 42 83.3
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 1.2e-12 75.9 42 83.3
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 1.2e-12 75.9 42 83.3
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 1.2e-12 75.9 42 83.3
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.2e-12 75.9 42 81.0
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 1.2e-12 75.9 42 83.3
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 1.5e-12 75.5 51 76.5
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 1.5e-12 75.5 42 83.3
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 2.0e-12 75.1 42 81.0
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 2.0e-12 75.1 42 81.0
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 2.0e-12 75.1 42 81.0
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 2.0e-12 75.1 42 81.0
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 2.6e-12 74.7 42 83.3
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 2.6e-12 74.7 42 81.0
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 2.6e-12 74.7 42 83.3
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 3.4e-12 74.3 42 78.6
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 3.4e-12 74.3 42 81.0
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 3.4e-12 74.3 42 81.0
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 4.5e-12 73.9 40 90.0
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 4.5e-12 73.9 42 81.0
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 5.9e-12 73.6 42 81.0
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 7.7e-12 73.2 38 92.1
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 7.7e-12 73.2 42 78.6
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 7.7e-12 73.2 42 81.0
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 7.7e-12 73.2 42 81.0
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.0e-11 72.8 42 81.0
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 1.0e-11 72.8 54 72.2
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 1.0e-11 72.8 42 81.0
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.0e-11 72.8 42 81.0
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 1.0e-11 72.8 42 81.0
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 1.0e-11 72.8 40 85.0
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 1.7e-11 72.0 42 78.6
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 1.7e-11 72.0 42 78.6
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.7e-11 72.0 42 78.6
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.7e-11 72.0 42 78.6
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 1.7e-11 72.0 42 78.6
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 1.7e-11 72.0 42 78.6
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 2.2e-11 71.6 42 81.0
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 2.9e-11 71.2 42 78.6
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 3.8e-11 70.9 42 78.6
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 76.2
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 6.5e-11 70.1 42 78.6
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 8.5e-11 69.7 40 82.5
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.1e-10 69.3 42 78.6
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.1e-10 69.3 42 78.6
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 1.9e-10 68.6 42 76.2
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 5.5e-10 67.0 42 76.2
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 1.2e-09 65.9 42 71.4
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 1.2e-09 65.9 42 71.4
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 73.8
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 1.6e-09 65.5 42 71.4
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 2.1e-09 65.1 42 69.0
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.1e-09 65.1 42 71.4
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 4.7e-09 63.9 45 64.4
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 4.7e-09 63.9 45 64.4
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 4.7e-09 63.9 42 69.0
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 4.7e-09 63.9 42 71.4
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.0e-08 62.8 33 90.9
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 1.4e-08 62.4 42 66.7
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 3.0e-08 61.2 42 66.7
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 1.1e-07 59.3 42 66.7
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 1.1e-07 59.3 42 64.3
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 1.1e-07 59.3 42 64.3
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 2.6e-07 58.2 41 63.4
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 2.6e-07 58.2 41 65.9
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 3.3e-07 57.8 42 61.9
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 7.4e-07 56.6 42 59.5
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 7.4e-07 56.6 42 61.9
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 9.7e-07 56.2 42 59.5
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 3.7e-06 54.3 42 54.8


User provided reference genes

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