Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M2FXAD Arachis hypogaea HOM05D006247 ORTHO05D007684 9.1e-175 616.7 289 100.0
arahy.Tifrunner.gnm1.ann1.B1Q0FL Arachis hypogaea HOM05D006247 ORTHO05D007684 1.7e-173 612.5 289 99.3
Glyma.17G063800 Glycine max HOM05D006247 ORTHO05D007684 6.0e-142 507.7 289 82.4
Lalb_Chr12g0199361 Lupinus albus HOM05D006247 ORTHO05D007684 2.3e-138 495.7 289 81.3
VMungo1215G1070 Vigna mungo HOM05D006247 ORTHO05D007684 1.2e-137 493.4 289 79.6
Lj4g0017814 Lotus japonicus HOM05D006247 ORTHO05D007684 2.6e-137 492.3 289 79.2
Ca_21220_v3 Cicer arietinum L. HOM05D006247 ORTHO05D007684 5.8e-137 491.1 289 78.5
Phvul.003G146300 Phaseolus vulgaris HOM05D006247 ORTHO05D007684 1.7e-136 489.6 289 79.9
Psat4g012560 Pisum sativum HOM05D006247 ORTHO05D007684 4.9e-136 488.0 289 79.6
Medtr4g128240 Medicago truncatula HOM05D006247 ORTHO05D007684 3.2e-135 485.3 289 78.5
QL02p097643 Quercus lobata HOM05D006247 ORTHO05D007684 1.1e-122 443.7 287 69.3
RcHm_v2.0_Chr4g0402581 Rosa chinensis HOM05D006247 ORTHO05D007684 4.6e-118 428.3 279 69.5
Thecc.09G172600 Theobroma cacao HOM05D006247 ORTHO05D007684 1.3e-115 420.2 285 69.1
FAN17G2058 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.4e-114 416.8 279 67.4
FAN07G1589 Fragaria x ananassa HOM05D006247 ORTHO05D007684 1.8e-114 416.4 279 68.1
Ciclev10007836m.g Citrus clementina HOM05D006247 ORTHO05D007684 2.6e-113 412.5 284 66.9
Duzib168G0886 Durio zibethinus HOM05D006247 ORTHO05D007684 2.6e-113 412.5 290 66.9
Potri.006G168900 Populus trichocarpa HOM05D006247 ORTHO05D007684 5.8e-113 411.4 279 67.0
CiPaw.07G192000 Carya illinoinensis HOM05D006247 ORTHO05D007684 7.6e-113 411.0 288 67.0
Gorai.004G100200 Gossypium raimondii HOM05D006247 ORTHO05D007684 1.3e-112 410.2 285 67.4
Gohir.A08G084700 Gossypium hirsutum HOM05D006247 ORTHO05D007684 3.8e-112 408.7 285 67.0
TWI34G1331 Tripterygium wilfordii HOM05D006247 ORTHO05D007684 4.9e-112 408.3 286 66.4
Sc18g0007480 Simmondsia chinensis HOM05D006247 ORTHO05D007684 6.4e-112 407.9 289 66.1
Manes.14G152800 Manihot esculenta HOM05D006247 ORTHO05D007684 2.4e-111 406.0 286 65.7
Gohir.D08G094300 Gossypium hirsutum HOM05D006247 ORTHO05D007684 4.2e-111 405.2 285 67.0
CSS0031352 Camellia sinensis var. sinensis HOM05D006247 ORTHO05D007684 1.2e-110 403.7 283 65.0
Prupe.1G086300 Prunus persica HOM05D006247 ORTHO05D007684 2.1e-110 402.9 286 65.4
Atru.chr7.645 Acer truncatum HOM05D006247 ORTHO05D007684 3.5e-110 402.1 284 66.2
FvH4_4g08310 Fragaria vesca HOM05D006247 ORTHO05D007684 3.9e-109 398.7 259 70.3
Hund09028 Selenicereus undatus HOM05D006247 ORTHO05D007684 1.5e-108 396.7 289 63.0
vmacro13121 Vaccinium macrocarpon HOM05D006247 ORTHO05D007684 1.6e-107 393.3 280 65.7
Haze_22104 Corylus avellana HOM05D006247 ORTHO05D007684 3.7e-107 392.1 273 66.3
HanXRQChr10g0308211 Helianthus annuus HOM05D006247 ORTHO05D007684 4.8e-107 391.7 283 63.3
Lsat_1_v5_gn_5_84660 Lactuca sativa HOM05D006247 ORTHO05D007684 4.8e-107 391.7 282 65.2
CANSAT11G2703 Cannabis sativa HOM05D006247 ORTHO05D007684 6.2e-107 391.3 283 61.1
Eucgr.C02305 Eucalyptus grandis HOM05D006247 ORTHO05D007684 4.0e-106 388.7 284 64.4
Solyc02g014520.4 Solanum lycopersicum HOM05D006247 ORTHO05D007684 4.0e-106 388.7 278 65.5
TPR.G5375 Trifolium pratense HOM05D006247 ORTHO05D007684 5.3e-106 388.3 206 84.5
Actinidia04160 Actinidia chinensis HOM05D006247 ORTHO05D007684 6.9e-106 387.9 277 65.7
SalBow1G0102 Salvia bowleyana HOM05D006247 ORTHO05D007684 3.4e-105 385.6 281 63.7
Oeu025222.1 Olea europaea HOM05D006247 ORTHO05D007684 4.5e-105 385.2 280 63.9
Sopen02g003860 Solanum pennellii HOM05D006247 ORTHO05D007684 1.3e-104 383.6 278 64.7
EL10Ac8g18280 Beta vulgaris HOM05D006247 ORTHO05D007684 3.8e-104 382.1 308 59.4
Peaxi162Scf00113g01818 Petunia axillaris HOM05D006247 ORTHO05D007684 3.8e-104 382.1 264 67.8
SGA_v2.0_scaffold12G06066 Striga asiatica HOM05D006247 ORTHO05D007684 4.9e-104 381.7 282 62.8
Migut.K00244 Erythranthe guttata HOM05D006247 ORTHO05D007684 1.4e-103 380.2 282 63.1
ECA234G4502 Erigeron canadensis HOM05D006247 ORTHO05D007684 1.9e-103 379.8 281 64.4
Cc06_g13290 Coffea canephora HOM05D006247 ORTHO05D007684 3.2e-103 379.0 281 62.6
ClCG11G012190 Citrullus lanatus HOM05D006247 ORTHO05D007684 1.2e-102 377.1 288 61.5
EL10Ac4g10218 Beta vulgaris HOM05D006247 ORTHO05D007684 3.5e-102 375.6 282 63.1
EL10Ac4g10223 Beta vulgaris HOM05D006247 ORTHO05D007684 3.5e-102 375.6 282 63.1
TAR383G1025 Trochodendron aralioides HOM05D006247 ORTHO05D007684 6.0e-102 374.8 276 64.5
Nitab4.5_0000018g0080 Nicotiana tabacum HOM05D006247 ORTHO05D007684 7.9e-102 374.4 266 65.8
MD16G1258300 Malus domestica HOM05D006247 ORTHO05D007684 2.3e-101 372.9 274 60.6
CsaV3_2G008340 Cucumis sativus L. HOM05D006247 ORTHO05D007684 5.1e-101 371.7 289 60.2
DCAR_014704 Daucus carota HOM05D006247 ORTHO05D007684 5.1e-101 371.7 283 61.5
AUR62040315 Chenopodium quinoa HOM05D006247 ORTHO05D007684 8.7e-101 370.9 292 61.3
Rhsim01G0005100 Rhododendron simsii HOM05D006247 ORTHO05D007684 8.7e-101 370.9 278 62.2
Sed0001652 Sechium edule HOM05D006247 ORTHO05D007684 4.3e-100 368.6 277 61.4
MSTRG.10736 Avicennia marina HOM05D006247 ORTHO05D007684 1.3e-99 367.1 280 60.4
GSVIVG01029207001 Vitis vinifera HOM05D006247 ORTHO05D007684 1.3e-99 367.1 290 59.7
Nitab4.5_0019045g0010 Nicotiana tabacum HOM05D006247 ORTHO05D007684 2.1e-99 366.3 266 65.0
BraA07t27984Z Brassica rapa HOM05D006247 ORTHO05D007684 2.8e-99 365.9 281 60.5
PSO170G0820 Papaver somniferum HOM05D006247 ORTHO05D007684 4.8e-99 365.2 273 63.4
A07p01840 Brassica napus HOM05D006247 ORTHO05D007684 2.4e-98 362.8 281 59.8
Nn2g12713 Nelumbo nucifera HOM05D006247 ORTHO05D007684 2.4e-98 362.8 286 60.8
PGR102G2305 Punica granatum HOM05D006247 ORTHO05D007684 5.3e-98 361.7 285 60.0
MBI14_g17363_MAGBIO Magnolia biondii HOM05D006247 ORTHO05D007684 1.2e-97 360.5 281 60.9
AT2G18850 Arabidopsis thaliana HOM05D006247 ORTHO05D007684 2.6e-97 359.4 277 60.3
THA.LOC104803499 Tarenaya hassleriana HOM05D006247 ORTHO05D007684 1.0e-96 357.5 279 59.9
Carub.0003s3308 Capsella rubella HOM05D006247 ORTHO05D007684 2.9e-96 355.9 279 58.8
PSO017G3786 Papaver somniferum HOM05D006247 ORTHO05D007684 4.9e-96 355.1 273 62.3
BolC7t40784H Brassica oleracea HOM05D006247 ORTHO05D007684 8.4e-96 354.4 284 58.1
BcaC06g36474 Brassica carinata HOM05D006247 ORTHO05D007684 2.5e-95 352.8 287 57.5
Ah.09g229830 Amaranthus hybridus HOM05D006247 ORTHO05D007684 5.5e-95 351.7 280 58.6
C07p03920 Brassica napus HOM05D006247 ORTHO05D007684 5.5e-95 351.7 284 57.4
AUR62033213 Chenopodium quinoa HOM05D006247 ORTHO05D007684 1.2e-94 350.5 305 57.4
Aa31LG8G15940 Aethionema arabicum HOM05D006247 ORTHO05D007684 2.7e-94 349.4 279 58.8
Sp3g32310 Schrenkiella parvula HOM05D006247 ORTHO05D007684 3.5e-94 349.0 280 58.9
AL3G53100 Arabidopsis lyrata HOM05D006247 ORTHO05D007684 4.6e-94 348.6 273 60.1
Aqoxy7G02323 Aquilegia oxysepala HOM05D006247 ORTHO05D007684 6.0e-94 348.2 285 58.6
BcaB03g16669 Brassica carinata HOM05D006247 ORTHO05D007684 1.3e-93 347.1 275 59.3
CARHR109410 Cardamine hirsuta HOM05D006247 ORTHO05D007684 1.8e-93 346.7 282 58.5
AUR62021296 Chenopodium quinoa HOM05D006247 ORTHO05D007684 5.1e-93 345.1 261 63.6
FAN22G0611 Fragaria x ananassa HOM05D006247 ORTHO05D007684 5.1e-93 345.1 279 58.1
TPR.G20696 Trifolium pratense HOM05D006247 ORTHO05D007684 3.3e-92 342.4 207 76.8
Dinv42726 Davidia involucrata HOM05D006247 ORTHO05D007684 7.4e-92 341.3 204 74.0
Dinv43375 Davidia involucrata HOM05D006247 ORTHO05D007684 7.4e-92 341.3 204 74.0
COL.COLO4_07069 Corchorus olitorius HOM05D006247 ORTHO05D007684 1.8e-90 336.7 285 58.6
Thhalv10001950m.g Eutrema salsugineum HOM05D006247 ORTHO05D007684 2.7e-86 322.8 307 52.8
MELO3C004030.2 Cucumis melo HOM05D006247 ORTHO05D007684 7.9e-86 321.2 223 65.9
Sabra06G0130300 Salix brachista HOM05D006247 ORTHO05D007684 1.1e-84 317.4 291 54.3
Rhsim01G0005000 Rhododendron simsii HOM05D006247 ORTHO05D007684 3.3e-84 315.8 281 56.6
HPP92_015229 Vanilla planifolia HOM05D006247 ORTHO05D007684 2.1e-78 296.6 280 51.1
ATR0580G346 Amborella trichopoda HOM05D006247 ORTHO05D007684 3.1e-74 282.7 218 62.8
Zm00001eb414720 Zea mays HOM05D006247 ORTHO05D007684 1.6e-70 270.4 195 64.1
Os08g0244400 Oryza sativa ssp. japonica HOM05D006247 ORTHO05D007684 3.3e-68 262.7 195 66.2
Lj9A685T58 Lonicera japonica HOM05D006247 ORTHO05D007684 7.4e-68 261.5 201 61.2
Hma1.2p1_3184F.1_g333740 Hydrangea macrophylla HOM05D006247 ORTHO05D007684 3.6e-62 242.7 195 59.0
CDE05G3038 Ceratophyllum demersum HOM05D006247 ORTHO05D007684 1.5e-52 210.7 281 40.6
AagrBONN_evm.TU.Sc2ySwM_117.653 Anthoceros agrestis HOM05D006247 ORTHO05D007684 4.1e-50 202.6 295 40.3
Mapoly0146s0042 Marchantia polymorpha HOM05D006247 ORTHO05D007684 7.7e-49 198.4 291 37.5
Eucgr.L03644 Eucalyptus grandis HOM05D006247 ORTHO05D007684 3.6e-46 189.5 227 45.4
SHI12522 Sapria himalayana HOM05D006247 ORTHO05D007684 4.7e-30 136.0 81 72.8
Cre13.g573000 Chlamydomonas reinhardtii HOM05D006247 ORTHO05D007684 7.1e-26 122.1 148 40.5
Cpa.g.sc95.55 Carica papaya HOM05D006247 ORTHO05D007684 1.6e-25 120.9 103 57.3
Cpa.g.sc95.54 Carica papaya HOM05D006247 ORTHO05D007684 5.1e-24 115.9 119 47.9
MCO11G807 Micromonas commoda HOM05D006247 ORTHO05D007684 1.2e-20 104.8 197 33.0
CBR_g47154 Chara braunii HOM05D006247 ORTHO05D007684 1.5e-20 104.4 83 53.0
FAN12G4057 Fragaria x ananassa HOM05D006247 ORTHO05D007684 7.1e-18 95.5 54 75.9
CBR_g35033 Chara braunii HOM05D006247 ORTHO05D007684 1.2e-17 94.7 83 48.2
Zm00001eb189210 Zea mays HOM05D004224 ORTHO05D006437 1.2e-14 84.7 138 34.1
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 1.8e-13 80.9 147 28.6
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 3.1e-13 80.1 138 32.6
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 3.1e-13 80.1 138 32.6
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 6.8e-13 79.0 151 30.5
Gohir.A07G163700 Gossypium hirsutum HOM05D004224 ORTHO05D006437 2.0e-12 77.4 138 31.9
SMO172G0057 Selaginella moellendorffii HOM05D006247 ORTHO05D007684 7.6e-12 75.5 118 34.7
SEGI_19089 Sequoiadendron giganteum HOM05D006247 ORTHO05D007684 9.3e-10 68.6 115 39.1
SMO358G0584 Selaginella moellendorffii HOM05D004224 ORTHO05D006437 4.6e-09 66.2 155 27.7
CARHR109420 Cardamine hirsuta HOM05D006247 ORTHO05D007684 1.3e-08 64.7 73 39.7
SMO367G0558 Selaginella moellendorffii HOM05D005456 ORTHO05D006805 5.6e-07 59.3 158 27.8
TAR383G0048 Trochodendron aralioides HOM05D006247 ORTHO05D007684 1.3e-06 58.2 58 48.3
MCO10G176 Micromonas commoda HOM05D005416 ORTHO05D007956 1.6e-06 57.8 108 30.6


User provided reference genes

Program Settings