Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 4.1e-265 917.5 471 100.0
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.2e-248 862.8 471 94.9
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 8.3e-218 760.4 471 80.3
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 7.8e-216 753.8 471 79.8
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 5.0e-215 751.1 468 79.9
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 9.5e-214 746.9 469 78.9
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 1.2e-213 746.5 461 80.0
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.2e-213 746.5 471 79.8
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 1.2e-213 746.5 469 79.3
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 2.1e-213 745.7 468 81.0
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 4.7e-213 744.6 469 78.5
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 4.0e-212 741.5 462 78.8
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 1.1e-196 690.3 467 73.2
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 3.9e-191 671.8 470 71.5
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.1e-190 670.2 423 80.4
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 1.7e-186 656.4 455 72.1
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 1.7e-186 656.4 457 71.6
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 1.1e-185 653.7 470 69.8
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 7.1e-185 651.0 462 71.0
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 9.3e-185 650.6 469 69.9
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 9.3e-185 650.6 469 70.6
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 6.7e-183 644.4 446 72.0
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 8.7e-183 644.0 469 69.5
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 8.7e-183 644.0 471 69.9
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 1.1e-182 643.7 448 71.7
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.5e-182 643.3 466 68.5
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 4.8e-181 638.3 462 70.6
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 8.1e-181 637.5 467 69.4
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.8e-180 636.3 462 69.5
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 4.0e-180 635.2 468 69.4
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 9.0e-180 634.0 462 69.7
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.0e-179 632.9 462 69.7
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 7.6e-179 630.9 462 68.0
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 1.3e-178 630.2 507 64.9
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 2.9e-178 629.0 476 67.9
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 9.3e-177 624.0 462 68.4
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 2.3e-175 619.4 439 72.0
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 3.0e-175 619.0 475 65.7
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 5.1e-175 618.2 462 68.8
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 5.1e-175 618.2 462 68.8
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 3.3e-174 615.5 475 65.5
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 4.3e-174 615.1 458 67.7
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 9.6e-174 614.0 453 69.8
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 2.8e-173 612.5 454 67.6
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 3.7e-173 612.1 454 67.8
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 1.1e-172 610.5 470 67.4
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.8e-172 609.8 444 70.3
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 5.3e-172 608.2 454 67.2
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 4.5e-171 605.1 459 67.8
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 4.5e-171 605.1 459 67.8
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 1.0e-170 604.0 458 67.0
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 2.9e-170 602.4 461 65.5
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 3.8e-170 602.1 457 66.3
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 4.9e-170 601.7 469 64.2
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 6.5e-170 601.3 460 65.2
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 8.4e-170 600.9 457 65.6
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 2.5e-169 599.4 468 64.3
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 5.5e-169 598.2 464 64.9
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.2e-168 597.0 457 65.9
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 1.0e-167 594.0 459 66.0
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 1.0e-167 594.0 462 65.6
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 2.3e-167 592.8 465 66.7
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.9e-166 589.7 496 61.9
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.3e-165 587.0 462 65.2
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.3e-165 587.0 469 65.0
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 2.2e-165 586.3 470 64.7
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 4.1e-164 582.0 463 66.1
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 2.2e-162 576.2 411 70.8
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 5.0e-162 575.1 462 64.7
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 3.9e-159 565.5 457 60.8
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.4e-156 557.0 453 61.8
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 2.6e-155 552.7 440 64.5
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.7e-154 550.1 459 62.1
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 8.5e-154 547.7 436 66.3
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 9.4e-153 544.3 467 59.7
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 4.8e-149 531.9 554 53.8
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 1.1e-148 530.8 524 55.5
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 1.4e-148 530.4 459 60.6
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 4.1e-148 528.9 450 60.7
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 5.0e-146 521.9 467 55.0
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 6.5e-146 521.5 458 60.0
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 8.5e-146 521.2 391 68.0
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 5.2e-143 511.9 404 66.8
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.6e-142 509.6 387 67.2
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.6e-139 499.6 463 57.7
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 2.7e-136 489.6 354 74.9
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 5.7e-134 481.9 460 55.9
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 1.3e-133 480.7 464 57.3
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 4.8e-133 478.8 480 56.5
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 6.3e-133 478.4 464 56.7
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 1.1e-132 477.6 353 69.7
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 8.5e-130 468.0 517 52.8
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.8e-127 460.3 497 52.5
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 6.8e-127 458.4 471 54.8
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 7.5e-126 454.9 461 53.8
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 1.4e-124 450.7 461 54.0
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 2.4e-124 449.9 360 65.0
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 2.3e-122 443.4 326 67.8
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 1.0e-114 417.9 322 63.4
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 1.0e-111 407.9 431 52.9
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 2.3e-111 406.8 371 56.3
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 5.0e-106 389.0 471 44.8
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.5e-105 387.5 481 46.8
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 1.6e-104 384.0 282 68.8
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 2.1e-104 383.6 465 45.8
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.1e-103 381.3 311 62.1
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 6.4e-101 372.1 441 49.7
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 1.5e-94 350.9 465 46.2
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 1.1e-89 334.7 274 62.8
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 2.1e-88 330.5 306 54.9
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 5.4e-84 315.8 293 57.0
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 3.5e-75 286.6 288 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 3.0e-74 283.5 370 45.7
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 2.6e-70 270.4 156 84.6
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 3.7e-64 250.0 753 27.8
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 6.2e-64 249.2 407 41.8
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 6.4e-61 239.2 461 35.1
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 6.9e-47 192.6 154 64.9
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.2e-43 181.8 182 56.0
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 1.0e-37 162.2 454 29.5
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 2.3e-34 151.0 182 47.8
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 3.2e-28 130.6 518 26.1
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-25 122.1 76 75.0
TAR636G2798 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.4e-23 114.4 71 76.1
C09p15950 Brassica napus HOM05D006075 ORTHO05D007527 5.3e-23 113.2 95 60.0
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 3.5e-22 110.5 94 57.4
BolC9t54506H Brassica oleracea HOM05D006075 ORTHO05D007527 4.4e-17 93.6 112 49.1
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 1.2e-14 85.5 162 34.0
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 1.7e-13 81.6 62 69.4
Pp3c15_22645 Physcomitrium patens HOM05D006075 ORTHO05D007527 3.0e-10 70.9 113 38.9
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.9e-08 63.5 82 47.6


User provided reference genes

Program Settings