Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 8.9e-93 343.6 173 100.0
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 9.9e-68 260.4 199 70.9
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 2.2e-67 259.2 206 69.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.5e-63 246.5 199 66.3
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 4.3e-63 245.0 199 66.3
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 9.6e-63 243.8 199 66.3
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 2.1e-62 242.7 199 65.3
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-61 240.4 199 65.8
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.8e-61 239.6 199 64.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 9.0e-61 237.3 199 65.3
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.6e-60 235.7 199 64.3
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 5.8e-60 234.6 199 63.8
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 5.8e-60 234.6 199 62.8
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.9e-59 232.3 199 60.8
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 4.9e-59 231.5 199 61.3
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 2.5e-58 229.2 199 62.3
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.2e-57 226.9 199 61.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.6e-57 226.5 199 60.3
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.1e-57 226.1 197 59.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 2.7e-57 225.7 199 60.8
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.7e-57 225.7 199 59.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.6e-57 224.9 199 61.3
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 4.6e-57 224.9 199 61.3
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 6.0e-57 224.6 201 59.7
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.0e-56 223.8 193 61.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.0e-56 223.8 199 59.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.3e-56 223.4 199 61.3
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 3.9e-56 221.9 192 61.5
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 5.1e-56 221.5 203 59.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 5.1e-56 221.5 199 60.3
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 8.7e-56 220.7 199 59.8
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.1e-55 220.3 199 60.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.1e-55 220.3 199 59.3
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.9e-55 219.5 199 60.3
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.5e-55 219.2 199 59.3
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.5e-55 219.2 193 61.7
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.3e-55 218.4 199 58.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.3e-55 218.4 216 57.9
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 7.4e-55 217.6 197 58.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.4e-55 217.6 197 59.9
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.4e-55 217.6 182 63.7
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.6e-54 216.5 198 60.1
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.6e-54 216.5 199 56.8
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 3.7e-54 215.3 199 59.3
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.1e-53 213.8 199 57.8
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.4e-53 213.4 197 58.4
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.1e-53 211.8 199 59.8
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 4.1e-53 211.8 199 57.8
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 5.3e-53 211.5 197 58.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 5.3e-53 211.5 197 57.9
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 5.3e-53 211.5 197 59.4
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 6.9e-53 211.1 199 57.8
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 9.0e-53 210.7 197 57.9
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.2e-52 210.3 203 56.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-52 209.9 175 61.7
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 2.0e-52 209.5 175 62.3
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.0e-52 209.5 218 53.7
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 2.0e-52 209.5 212 55.7
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.0e-52 209.5 197 58.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-52 209.1 197 57.9
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.6e-52 209.1 197 57.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.6e-52 209.1 197 56.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.4e-52 208.8 197 56.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.4e-52 208.8 199 57.8
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.5e-52 208.4 197 56.9
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.8e-52 208.0 199 56.8
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 7.6e-52 207.6 196 58.7
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 7.6e-52 207.6 197 57.9
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.0e-51 207.2 199 57.8
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.7e-51 206.5 197 55.3
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.7e-51 206.5 197 57.9
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 2.2e-51 206.1 197 58.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.9e-51 205.7 197 56.9
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.9e-51 205.7 197 57.9
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.9e-51 205.7 219 53.0
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.8e-51 205.3 233 54.5
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.4e-50 203.4 197 58.4
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.5e-50 202.6 192 58.9
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-50 202.6 192 57.8
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 2.5e-50 202.6 192 58.9
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.2e-50 202.2 225 50.7
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 5.5e-50 201.4 199 54.8
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 5.5e-50 201.4 197 56.3
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.2e-49 200.3 194 57.2
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.6e-49 199.9 199 54.3
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.1e-49 199.5 196 56.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 6.1e-49 198.0 199 53.8
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.0e-48 197.2 199 54.8
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.3e-48 196.8 197 55.8
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.0e-48 195.7 197 55.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 3.9e-48 195.3 194 55.2
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 4.3e-47 191.8 233 49.8
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 4.8e-46 188.3 198 53.0
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 3.1e-45 185.7 197 53.8
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 5.3e-45 184.9 197 53.8
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 3.4e-44 182.2 193 53.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.8e-43 178.7 172 56.4
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.4e-42 176.8 197 50.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.2e-41 173.7 196 49.5
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 3.0e-40 169.1 230 45.7
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.5e-39 166.0 189 52.9
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 9.7e-39 164.1 170 54.7
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 6.3e-38 161.4 198 48.5
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.4e-37 160.2 166 54.8
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 1.0e-35 154.1 99 78.8
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.6e-33 146.7 168 48.2
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 3.9e-32 142.1 165 50.9
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-31 140.6 91 73.6
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 7.4e-31 137.9 153 49.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.2e-26 122.1 100 61.0
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 5.5e-26 121.7 179 39.7
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.6e-25 120.2 105 60.0
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.7e-25 118.6 169 43.2
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 6.7e-24 114.8 181 36.5
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 8.2e-22 107.8 190 35.8
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 7.0e-21 104.8 166 44.6
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 7.7e-20 101.3 166 43.4
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-19 100.1 137 42.3
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 9.4e-18 94.4 51 86.3
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-17 93.6 55 78.2
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-17 93.6 55 78.2
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 6.8e-16 88.2 57 71.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.2e-15 87.4 48 87.5
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.2e-12 77.4 48 77.1
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 2.7e-12 76.3 56 67.9
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-12 76.3 48 75.0
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-12 76.3 48 75.0
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 2.7e-12 76.3 48 75.0
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 7.7e-12 74.7 46 78.3
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 7.7e-12 74.7 46 78.3
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.7e-11 73.6 59 61.0
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 8.5e-11 71.2 59 55.9
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.4e-08 63.9 49 61.2
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 3.4e-07 59.3 136 26.5
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-07 58.2 50 52.0
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 9.8e-07 57.8 48 62.5
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 3.7e-06 55.8 42 64.3
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 6.3e-06 55.1 73 39.7


User provided reference genes

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