Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 3.7e-126 454.9 234 100.0
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 6.4e-110 401.0 328 69.2
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.1e-97 359.4 235 80.4
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 3.6e-97 358.6 234 79.9
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 6.2e-97 357.8 237 82.3
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 8.1e-97 357.5 235 80.0
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 6.4e-94 347.8 236 79.7
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 8.4e-94 347.4 234 77.8
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.0e-91 340.5 236 77.5
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 4.3e-90 335.1 236 79.7
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.1e-88 330.5 234 77.8
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.2e-86 322.8 229 76.0
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.6e-84 316.6 233 73.8
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 6.6e-83 311.2 233 71.7
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 7.3e-82 307.8 232 70.3
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 6.9e-80 301.2 234 70.1
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.5e-79 300.1 230 70.9
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 3.8e-78 295.4 231 68.8
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 8.4e-78 294.3 231 68.0
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 4.6e-76 288.5 231 67.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.3e-75 286.2 233 65.2
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.5e-74 282.7 232 67.7
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 2.8e-73 279.3 231 66.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 3.6e-73 278.9 231 67.1
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 4.8e-73 278.5 231 66.7
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 6.2e-73 278.1 230 67.0
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 8.1e-73 277.7 231 65.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.8e-72 276.6 230 65.7
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 1.8e-72 276.6 232 65.9
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 3.1e-72 275.8 231 64.9
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.1e-72 275.8 232 65.1
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 5.3e-72 275.0 231 66.2
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 5.3e-72 275.0 231 66.2
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 6.9e-72 274.6 231 66.2
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.4e-71 272.3 230 64.3
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.4e-71 272.3 231 61.9
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.5e-71 271.9 234 65.0
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 7.6e-71 271.2 232 65.9
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 7.6e-71 271.2 235 63.0
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.3e-70 270.4 233 61.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.3e-70 270.4 229 64.6
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.9e-70 269.2 235 62.1
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 4.9e-70 268.5 185 73.5
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 6.4e-70 268.1 231 64.9
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 1.1e-69 267.3 201 70.1
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-69 266.9 232 65.1
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 2.4e-69 266.2 230 62.2
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 4.2e-69 265.4 232 63.8
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.5e-69 265.0 232 64.2
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 9.3e-69 264.2 231 61.5
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 9.3e-69 264.2 233 61.8
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.2e-68 263.8 233 62.7
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.1e-68 263.1 260 58.5
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 3.5e-68 262.3 232 62.1
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.0e-67 260.8 230 62.2
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 3.9e-67 258.8 232 60.3
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 3.9e-67 258.8 233 60.1
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 5.1e-67 258.5 201 69.2
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 6.7e-67 258.1 233 60.9
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 8.7e-67 257.7 228 63.6
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 8.7e-67 257.7 235 62.1
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.1e-66 257.3 232 63.4
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.1e-66 257.3 233 61.8
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.5e-66 256.9 250 59.6
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.5e-66 256.1 233 61.8
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 3.3e-66 255.8 235 61.3
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 4.3e-66 255.4 232 62.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 4.3e-66 255.4 235 61.3
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.6e-66 255.0 230 60.4
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 5.6e-66 255.0 230 61.3
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 9.6e-66 254.2 232 59.5
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 9.6e-66 254.2 232 59.5
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.7e-65 252.3 201 65.2
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 4.8e-65 251.9 233 62.2
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.8e-65 251.9 231 61.0
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 6.2e-65 251.5 233 60.1
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.1e-64 250.8 233 60.5
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 1.1e-64 250.8 199 65.8
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-64 250.4 219 64.4
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.8e-64 250.0 234 60.7
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 4.0e-64 248.8 231 59.7
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 4.0e-64 248.8 231 60.2
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 1.5e-63 246.9 231 58.4
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.5e-63 246.9 231 59.3
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 2.0e-63 246.5 229 59.8
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.0e-63 246.5 208 63.9
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.6e-63 246.1 203 64.0
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 5.8e-63 245.0 231 60.6
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 7.6e-63 244.6 212 61.8
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 7.6e-63 244.6 231 60.6
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 1.0e-62 244.2 234 57.7
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.3e-62 243.8 218 62.8
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.7e-62 243.4 230 60.4
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 3.8e-62 242.3 243 56.8
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 4.9e-62 241.9 236 57.6
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.4e-61 240.4 174 69.5
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 1.2e-60 237.3 231 58.0
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 2.7e-60 236.1 235 57.0
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.3e-59 233.0 265 52.1
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 6.7e-59 231.5 239 56.5
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.9e-58 229.9 154 75.3
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.9e-58 229.9 231 55.8
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.9e-58 229.9 231 55.8
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 1.9e-58 229.9 167 69.5
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 4.3e-58 228.8 232 57.3
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 5.7e-58 228.4 232 56.9
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 5.7e-58 228.4 232 56.9
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.6e-57 226.9 237 56.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.1e-57 226.5 195 65.6
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 2.1e-57 226.5 230 56.5
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 2.1e-57 226.5 179 65.4
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 8.2e-57 224.6 239 54.4
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 1.1e-56 224.2 236 53.8
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.8e-56 223.4 201 59.7
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 9.0e-56 221.1 231 55.0
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 9.0e-56 221.1 231 55.0
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.6e-55 219.5 237 54.0
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 5.9e-55 218.4 156 75.6
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 7.6e-55 218.0 231 55.4
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 1.1e-53 214.2 233 53.6
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.9e-53 213.4 256 50.8
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-53 213.4 152 70.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 4.2e-53 212.2 224 54.0
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 4.3e-50 202.2 239 51.9
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.6e-49 200.3 232 51.3
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 2.4e-48 196.4 235 49.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 2.4e-48 196.4 216 54.2
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 2.4e-48 196.4 208 54.3
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.9e-47 191.8 230 48.3
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.7e-47 191.4 232 49.6
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 2.9e-46 189.5 136 71.3
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 5.0e-46 188.7 211 51.7
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.9e-45 186.8 215 52.6
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 9.4e-45 184.5 231 48.5
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.0e-43 181.0 234 46.6
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.0e-43 181.0 153 65.4
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 1.8e-40 170.2 128 67.2
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 2.0e-39 166.8 100 86.0
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.2e-38 163.3 153 58.2
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 2.7e-36 156.4 106 74.5
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 5.2e-35 152.1 111 73.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 8.8e-35 151.4 154 55.8
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.7e-33 147.1 77 96.1
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.8e-33 145.6 132 62.1
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.6e-31 139.8 132 57.6
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.0e-30 137.9 131 55.7
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 3.8e-30 136.0 156 53.2
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.2e-29 132.9 140 50.7
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 5.5e-29 132.1 99 62.6
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-22 110.9 71 80.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 2.3e-19 100.1 64 81.2
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 5.7e-18 95.5 96 57.3
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 5.7e-18 95.5 96 57.3
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.0e-15 87.0 68 58.8
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 2.5e-13 80.1 103 41.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.6e-12 77.4 134 34.3
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 8.8e-11 71.6 105 39.0


User provided reference genes

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