Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 0.0e+00 1247.3 622 100.0
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 6.7e-292 1006.9 642 83.5
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.3e-263 912.9 620 76.0
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 5.2e-260 901.0 620 74.8
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.1e-257 893.3 640 73.0
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 3.5e-256 888.3 619 72.9
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 6.2e-253 877.5 616 73.7
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 7.3e-246 854.0 604 73.5
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.7e-226 789.6 628 66.2
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.2e-226 789.3 630 65.9
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.7e-224 782.3 643 64.5
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.4e-220 770.0 637 64.1
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 2.4e-220 769.2 636 63.2
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 9.0e-220 767.3 619 64.3
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 4.9e-218 761.5 622 64.5
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 3.2e-217 758.8 631 63.4
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 9.3e-217 757.3 621 64.1
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 2.7e-216 755.7 628 63.7
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 5.1e-215 751.5 622 64.1
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 5.1e-215 751.5 622 63.7
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 3.3e-214 748.8 622 63.7
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 8.2e-213 744.2 651 61.4
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.1e-212 743.8 637 63.7
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.1e-212 743.8 675 59.7
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.5e-211 740.0 622 63.5
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.6e-211 739.2 619 62.0
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 2.6e-211 739.2 633 61.0
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 4.5e-211 738.4 622 63.3
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 7.6e-211 737.6 622 63.2
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 2.2e-210 736.1 623 61.5
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 6.0e-208 728.0 616 61.9
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 4.8e-205 718.4 597 63.8
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 1.8e-204 716.5 638 59.4
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.7e-202 709.9 702 56.1
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 8.7e-199 697.6 607 61.1
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 2.8e-197 692.6 685 56.6
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 4.8e-197 691.8 619 59.5
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 2.2e-194 682.9 443 78.6
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 4.6e-192 675.2 619 57.4
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 2.3e-191 672.9 632 57.9
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 4.8e-189 665.2 671 54.7
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.1e-188 664.1 625 58.9
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.0e-187 659.8 639 55.7
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.1e-177 627.5 522 62.1
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.9e-177 626.7 521 62.0
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 9.4e-177 624.4 432 75.9
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.8e-175 620.2 515 63.3
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.0e-175 619.4 648 54.0
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.7e-173 612.5 653 52.2
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 6.1e-168 595.1 400 77.5
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 7.5e-166 588.2 552 56.2
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.8e-164 583.6 620 51.9
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.9e-161 573.5 633 53.9
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 7.2e-161 571.6 527 58.3
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.8e-160 569.7 655 51.6
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.8e-160 569.7 655 51.6
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.6e-160 569.3 615 51.7
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 8.3e-157 558.1 522 58.0
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.5e-153 546.6 633 50.7
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.8e-148 530.4 452 64.6
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.2e-148 528.1 631 51.2
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.7e-146 523.9 628 45.9
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 3.9e-146 522.7 508 56.1
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.0e-138 498.0 670 46.4
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 8.6e-138 495.0 461 60.1
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.1e-137 494.6 390 66.7
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.3e-137 493.0 451 62.3
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 4.7e-136 489.2 321 74.8
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.2e-136 488.8 461 59.9
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 3.4e-134 483.0 303 76.9
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 2.9e-133 479.9 432 58.8
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 8.3e-133 478.4 384 66.1
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.4e-132 477.6 451 58.5
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 2.1e-131 473.8 442 59.5
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 2.1e-131 473.8 434 58.8
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 4.6e-131 472.6 540 48.7
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 8.6e-130 468.4 259 88.0
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 2.6e-126 456.8 509 52.7
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.2e-120 438.0 439 54.0
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 3.9e-114 416.4 632 41.0
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 4.2e-108 396.4 603 40.0
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 6.0e-107 392.5 609 39.2
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 9.7e-81 305.4 285 60.0
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.2e-76 290.4 235 65.5
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 2.0e-70 271.2 175 76.0
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.5e-68 264.2 152 82.2
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 5.7e-65 253.1 322 43.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 7.4e-65 252.7 183 65.0
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.7e-64 251.5 178 68.5
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 2.2e-64 251.1 174 70.1
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 8.2e-64 249.2 174 67.8
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 9.1e-63 245.7 271 53.9
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 4.5e-62 243.4 187 63.6
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 2.2e-61 241.1 146 82.9
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 3.8e-61 240.4 154 77.9
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 6.7e-58 229.6 115 93.0
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.2e-56 222.6 180 61.7
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 1.4e-55 221.9 160 65.0
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 3.1e-55 220.7 174 60.3
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 5.3e-55 219.9 174 59.2
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 2.7e-54 217.6 174 58.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.9e-53 214.2 176 63.1
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.9e-52 211.5 174 57.5
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 7.2e-52 209.5 596 28.5
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 8.8e-50 202.6 315 38.7
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 2.8e-48 197.6 117 83.8
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-47 195.7 137 75.2
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 2.4e-47 194.5 115 84.3
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 1.5e-41 175.3 175 49.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 8.3e-40 169.5 133 62.4
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.1e-39 169.1 133 61.7
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.4e-39 168.7 130 63.8
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 4.1e-39 167.2 130 59.2
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.3e-36 157.5 90 80.0
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 7.3e-36 156.4 243 40.3
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 4.1e-31 140.6 114 64.9
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 1.7e-29 135.2 189 40.7
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 6.8e-26 123.2 82 76.8
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.9e-24 117.9 189 42.9
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.3e-21 109.0 161 32.9
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.6e-19 102.1 57 75.4
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.6e-19 100.9 56 85.7
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.8e-18 98.6 51 94.1
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 7.5e-17 93.2 58 77.6
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 7.3e-12 76.6 61 62.3
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 1.2e-11 75.9 211 31.8
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 3.1e-10 71.2 41 78.0
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 7.6e-09 66.6 40 77.5
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 8.4e-08 63.2 234 24.8
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.4e-07 62.4 233 23.2
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 3.2e-07 61.2 57 52.6
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 2.1e-06 58.5 228 25.4
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 2.7e-06 58.2 88 39.8


User provided reference genes

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