Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 8.1e-263 909.8 449 100.0
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 7.6e-253 876.7 451 97.1
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 5.2e-169 598.2 472 65.7
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.6e-168 595.9 483 64.4
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 6.4e-167 591.3 502 62.4
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 8.3e-167 590.9 505 62.0
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.9e-166 589.7 500 62.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 2.3e-164 582.8 474 64.3
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.9e-163 579.7 436 67.4
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 6.2e-162 574.7 500 61.0
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 3.1e-161 572.4 474 62.7
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.3e-159 567.0 495 60.0
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.4e-158 562.8 476 62.2
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 5.6e-155 551.6 510 59.4
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 6.2e-154 548.1 403 68.2
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.1e-153 547.4 452 64.8
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 7.8e-149 531.2 526 54.8
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.7e-148 530.0 530 53.8
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.1e-145 519.2 479 56.2
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.5e-144 516.9 481 56.3
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.0e-144 516.5 475 56.4
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.4e-144 515.4 483 56.9
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.7e-143 513.5 482 57.3
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 1.4e-142 510.4 476 56.1
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.4e-142 509.6 535 53.5
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 5.4e-142 508.4 471 56.1
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.2e-141 507.3 479 55.9
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.7e-141 506.1 534 50.7
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 7.8e-141 504.6 474 56.3
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.9e-140 502.3 518 51.7
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 6.6e-140 501.5 460 55.9
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 6.6e-140 501.5 532 51.5
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 6.6e-140 501.5 477 55.3
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.1e-139 500.7 445 59.3
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-139 500.7 478 54.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.5e-139 500.4 461 56.6
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.5e-139 500.4 531 51.2
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 5.6e-139 498.4 484 53.7
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 7.3e-139 498.0 549 51.4
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.3e-138 497.3 488 54.7
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 2.8e-138 496.1 496 52.6
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.8e-138 496.1 512 51.8
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 6.2e-138 495.0 493 54.4
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 8.1e-138 494.6 476 55.0
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.4e-137 493.0 468 55.6
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 2.4e-137 493.0 531 51.2
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 1.2e-136 490.7 517 51.3
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.5e-136 490.3 470 54.9
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.4e-136 489.2 478 53.8
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 4.5e-136 488.8 515 50.3
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.5e-136 488.8 479 53.2
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 7.6e-136 488.0 459 53.4
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 9.9e-136 487.6 525 51.4
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 9.9e-136 487.6 479 53.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.7e-135 486.9 530 50.8
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 2.9e-135 486.1 520 50.4
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 3.8e-135 485.7 466 57.1
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 6.4e-135 485.0 520 50.0
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.9e-134 483.4 469 53.1
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.9e-134 483.4 524 50.8
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.3e-134 481.1 480 52.7
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.2e-133 480.7 472 53.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.1e-133 479.9 495 53.1
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 4.6e-133 478.8 494 52.4
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 6.0e-133 478.4 428 56.5
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.8e-132 476.9 470 54.3
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.5e-131 473.0 463 53.8
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 2.5e-131 473.0 520 50.0
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 9.6e-131 471.1 491 51.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.1e-130 469.9 463 52.9
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.8e-130 469.5 445 54.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.8e-130 469.5 534 48.1
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-130 469.2 487 50.5
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 3.7e-130 469.2 508 49.8
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 4.8e-130 468.8 480 51.0
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 8.1e-130 468.0 450 55.8
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.1e-129 467.6 517 48.9
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.8e-129 466.8 508 50.4
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.4e-129 466.5 468 52.8
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 3.1e-129 466.1 467 53.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.1e-129 466.1 530 48.7
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 6.9e-129 464.9 468 52.6
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 2.0e-128 463.4 420 58.6
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 4.5e-128 462.2 531 48.4
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.3e-127 460.7 438 55.0
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.7e-127 460.3 480 50.4
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.7e-127 460.3 462 52.2
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.9e-127 459.5 485 50.1
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 4.9e-127 458.8 529 48.4
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 6.4e-127 458.4 517 48.4
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.9e-126 456.8 462 50.4
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 4.2e-126 455.7 499 48.7
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 9.3e-126 454.5 515 48.5
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.2e-125 454.1 484 50.4
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.2e-125 454.1 438 54.6
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 4.3e-123 445.7 485 50.9
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 4.3e-123 445.7 494 47.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 1.3e-122 444.1 484 49.2
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 2.1e-122 443.4 476 51.1
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 3.1e-121 439.5 505 47.1
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-120 437.2 480 49.4
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.7e-119 433.7 505 46.5
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 8.7e-116 421.4 425 54.6
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 3.3e-115 419.5 548 44.7
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 3.7e-114 416.0 465 48.2
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 3.1e-113 412.9 521 43.4
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 5.9e-112 408.7 478 48.1
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 1.0e-111 407.9 460 46.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 2.9e-111 406.4 491 48.3
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 2.9e-111 406.4 508 46.1
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.2e-109 401.0 466 48.7
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 3.6e-109 399.4 532 42.5
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 3.3e-107 392.9 433 48.5
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 7.9e-101 371.7 511 40.5
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.0e-96 357.1 515 41.0
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.6e-96 356.7 484 42.6
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.5e-96 355.9 512 39.1
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 7.7e-96 355.1 486 41.2
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.0e-95 352.4 513 39.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 1.2e-93 347.8 480 44.2
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-93 347.4 512 38.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.6e-93 347.4 512 38.3
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-93 346.7 509 39.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.3e-92 343.6 391 49.4
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.7e-91 339.0 474 43.0
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.3e-90 337.8 227 69.2
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.1e-81 306.6 440 44.1
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.0e-79 301.6 230 63.5
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.7e-79 300.8 501 37.1
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 3.8e-79 299.7 405 42.7
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 2.7e-72 276.9 347 43.8
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.1e-70 271.6 178 70.2
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.8e-66 256.9 649 28.8
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 3.7e-66 256.5 163 71.2
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.1e-61 239.2 604 30.3
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.0e-61 238.8 573 29.1
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.9e-58 230.3 380 35.5
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.0e-56 224.2 373 39.4
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 8.9e-44 182.2 401 31.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 2.8e-37 160.6 312 35.9
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 2.0e-35 154.5 171 53.2
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.3e-34 151.8 422 31.0
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 2.9e-34 150.6 84 91.7
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 8.4e-34 149.1 129 62.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.9e-33 147.9 115 67.0
arahy.Tifrunner.gnm1.ann1.YJBK1K Arachis hypogaea HOM05D004583 ORTHO05D005469 6.0e-32 142.9 84 88.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 4.3e-30 136.7 93 69.9
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.4e-27 126.7 94 62.8
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 7.1e-25 119.4 129 50.4
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.3e-23 114.4 276 31.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 1.5e-22 111.7 255 33.3
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 4.3e-22 110.2 72 69.4
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.3e-22 110.2 141 44.0
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.6e-21 108.2 180 34.4
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 2.6e-19 100.9 99 53.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 2.4e-17 94.4 68 61.8
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 3.0e-07 60.8 111 36.0
TAR068G0006 Trochodendron aralioides HOM05D004346 ORTHO05D005153 5.1e-07 60.1 107 35.5
TAR376G0822 Trochodendron aralioides HOM05D004346 ORTHO05D005153 5.1e-07 60.1 107 36.4
arahy.Tifrunner.gnm1.ann1.N1N6FA Arachis hypogaea HOM05D000745 ORTHO05D000641 1.9e-06 58.2 32 84.4
CSS0003618 Camellia sinensis var. sinensis HOM05D004346 ORTHO05D005153 1.9e-06 58.2 107 35.5
Sopen04g034450 Solanum pennellii HOM05D004346 ORTHO05D005153 2.5e-06 57.8 107 35.5
PGSC0003DMG400003704 Solanum tuberosum HOM05D004346 ORTHO05D005153 2.5e-06 57.8 107 35.5
Cc10_g02310 Coffea canephora HOM05D004346 ORTHO05D005153 7.4e-06 56.2 107 35.5
Manes.18G022200 Manihot esculenta HOM05D004346 ORTHO05D005153 7.4e-06 56.2 105 36.2
Nn5g29149 Nelumbo nucifera HOM05D004346 ORTHO05D005153 7.4e-06 56.2 122 32.8
Cpa.g.sc698.2 Carica papaya HOM05D004346 ORTHO05D005153 9.6e-06 55.8 106 35.8
Dinv39468 Davidia involucrata HOM05D004346 ORTHO05D005153 9.6e-06 55.8 107 35.5
Sed0026661 Sechium edule HOM05D004346 ORTHO05D009095 9.6e-06 55.8 105 35.2


User provided reference genes

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