Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.4e-121 438.3 220 100.0
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 6.0e-118 427.6 220 97.7
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 6.6e-117 424.1 220 97.3
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.6e-115 418.3 220 96.4
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 1.0e-85 320.5 226 73.5
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 2.0e-81 306.2 228 70.6
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 2.1e-78 296.2 227 68.7
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.0e-77 293.9 227 70.5
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.5e-76 290.0 227 67.0
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 4.3e-76 288.5 228 70.2
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 5.7e-76 288.1 215 70.2
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 3.1e-74 282.3 214 69.6
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 5.3e-74 281.6 229 66.4
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 3.4e-73 278.9 225 64.4
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 5.9e-73 278.1 227 65.2
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 2.9e-72 275.8 226 65.5
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 1.1e-71 273.9 231 63.6
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.1e-71 273.9 231 62.3
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 2.5e-71 272.7 226 65.5
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 3.2e-71 272.3 225 66.2
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 5.5e-71 271.6 230 65.7
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 1.3e-69 266.9 226 64.6
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 2.3e-69 266.2 232 62.1
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 2.3e-69 266.2 230 62.6
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.3e-69 266.2 229 63.3
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.5e-68 263.5 226 61.9
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.9e-68 263.1 233 60.5
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 4.3e-68 261.9 233 60.9
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 4.3e-68 261.9 226 62.8
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 4.3e-68 261.9 222 64.0
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 9.7e-68 260.8 229 60.7
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 9.7e-68 260.8 232 60.8
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.3e-67 260.4 233 60.5
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 4.8e-67 258.5 225 62.7
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 4.8e-67 258.5 222 66.2
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 8.2e-67 257.7 230 60.9
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.1e-66 257.3 228 60.1
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.4e-66 256.9 227 61.2
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 2.4e-66 256.1 225 61.3
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.1e-66 255.8 232 58.6
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 5.3e-66 255.0 224 60.3
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 6.9e-66 254.6 225 60.9
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 9.0e-66 254.2 240 60.0
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 9.0e-66 254.2 226 59.7
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 9.0e-66 254.2 234 61.5
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 1.2e-65 253.8 228 61.4
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.2e-65 253.8 231 58.9
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.6e-65 252.7 228 61.0
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.6e-65 252.7 226 60.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 4.5e-65 251.9 232 59.5
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 4.5e-65 251.9 226 59.7
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 4.5e-65 251.9 228 61.4
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 4.5e-65 251.9 226 60.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 7.7e-65 251.1 208 64.4
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 1.0e-64 250.8 245 56.7
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.2e-64 249.6 222 60.8
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 2.2e-64 249.6 231 60.2
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 3.8e-64 248.8 228 61.4
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 2.5e-63 246.1 226 59.7
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.2e-62 243.8 231 57.6
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.2e-62 243.8 221 61.1
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 4.6e-62 241.9 230 57.0
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.8e-61 240.0 229 58.5
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 5.1e-61 238.4 228 58.8
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.0e-60 236.5 226 58.8
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 3.3e-60 235.7 232 56.9
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 4.4e-60 235.3 233 56.7
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 5.7e-60 235.0 227 58.6
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 7.4e-60 234.6 228 58.8
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 1.3e-59 233.8 231 56.3
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.8e-59 232.6 210 59.0
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 6.3e-59 231.5 232 56.0
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 6.3e-59 231.5 232 56.0
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 3.1e-58 229.2 227 57.7
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 6.9e-58 228.0 227 56.4
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 6.9e-58 228.0 227 56.8
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 3.4e-57 225.7 226 55.8
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 3.4e-57 225.7 229 56.3
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.0e-56 224.2 174 68.4
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 1.7e-56 223.4 229 55.9
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 2.2e-56 223.0 230 56.5
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 2.2e-56 223.0 225 54.7
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 6.5e-56 221.5 229 54.6
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 8.5e-56 221.1 212 55.2
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.1e-55 220.7 230 54.8
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.4e-55 220.3 220 56.4
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 5.5e-55 218.4 231 53.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.6e-54 216.9 237 54.0
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 3.6e-54 215.7 229 52.4
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 3.0e-53 212.6 235 52.3
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 3.9e-53 212.2 239 53.1
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.1e-52 210.7 211 53.6
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.6e-52 209.5 220 53.2
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 9.7e-52 207.6 231 54.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 6.3e-51 204.9 243 50.6
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 1.4e-50 203.8 279 47.0
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.5e-49 198.7 230 53.5
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 5.9e-49 198.4 281 45.2
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 2.9e-48 196.1 222 51.8
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 8.5e-48 194.5 144 66.0
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 4.7e-46 188.7 169 60.4
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 3.3e-44 182.6 235 50.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 5.7e-44 181.8 234 48.7
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.4e-42 177.2 224 47.8
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.1e-42 175.6 223 47.1
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 9.1e-42 174.5 233 49.4
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 2.0e-41 173.3 231 48.9
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 6.5e-40 168.3 236 45.3
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 2.0e-36 156.8 260 40.8
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 2.2e-35 153.3 230 42.6
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 4.8e-35 152.1 132 59.8
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.3e-35 151.4 133 66.2
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 8.3e-35 151.4 228 41.2
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.4e-34 150.6 228 41.7
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 7.0e-34 148.3 221 41.6
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.3e-32 144.1 140 58.6
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.3e-29 133.3 136 55.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 6.8e-29 131.7 242 37.6
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 2.2e-27 126.7 112 61.6
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.7e-27 125.9 173 42.8
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 8.3e-27 124.8 223 39.9
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 2.7e-25 119.8 99 62.6
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.0e-24 117.9 94 69.1
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.0e-21 107.8 93 61.3
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 3.0e-21 106.3 212 36.8
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 4.4e-20 102.4 140 44.3
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 7.5e-20 101.7 136 44.1
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.2e-19 100.1 100 53.0
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.7e-19 99.4 92 60.9
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 3.3e-15 86.3 158 35.4
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 3.6e-14 82.8 209 33.0
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 3.6e-14 82.8 129 42.6
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 5.2e-13 79.0 114 44.7
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.3e-11 74.3 78 53.8
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 8.3e-11 71.6 78 51.3
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.0e-09 67.0 73 52.1
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 2.7e-09 66.6 126 38.1
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.0e-08 64.7 100 42.0
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 3.3e-07 59.7 181 28.2


User provided reference genes

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