Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 1.3e-169 599.7 331 100.0
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 3.8e-169 598.2 331 94.9
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 2.1e-122 443.0 328 69.5
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 7.9e-122 441.0 331 72.2
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 1.7e-121 439.9 327 67.6
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 2.5e-120 436.0 327 72.8
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 4.5e-117 425.2 334 76.0
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 7.6e-117 424.5 322 72.0
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 4.6e-114 415.2 332 71.7
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 1.8e-113 413.3 322 69.9
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 3.3e-112 409.1 333 73.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 3.1e-110 402.5 333 73.0
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 9.0e-110 401.0 330 69.4
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 1.2e-109 400.6 318 62.3
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.5e-109 400.2 317 64.0
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 1.6e-106 390.2 325 65.5
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 4.6e-106 388.7 325 65.2
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 4.8e-103 378.6 322 65.8
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 1.5e-101 373.6 322 64.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.5e-98 362.5 318 61.3
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 3.0e-97 359.4 317 63.7
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 1.1e-96 357.5 318 59.1
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 9.7e-96 354.4 214 79.0
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 3.8e-92 342.4 329 55.6
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 7.2e-91 338.2 320 55.6
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.2e-90 337.4 317 56.8
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 2.5e-88 329.7 330 52.1
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 5.7e-88 328.6 325 54.5
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 1.1e-86 324.3 335 50.4
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.4e-86 323.9 315 53.0
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 1.8e-86 323.6 335 50.4
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 2.4e-86 323.2 326 52.5
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 4.1e-86 322.4 318 57.5
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 5.3e-86 322.0 319 53.0
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 6.9e-86 321.6 315 53.0
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 9.1e-86 321.2 329 52.6
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 3.4e-85 319.3 314 51.9
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 5.9e-85 318.5 326 51.5
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 7.7e-85 318.2 329 53.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 1.0e-84 317.8 319 51.4
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 1.0e-84 317.8 329 54.4
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.3e-84 317.4 322 52.8
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 1.7e-84 317.0 319 51.7
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 2.9e-84 316.2 320 50.9
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 5.0e-84 315.5 326 51.2
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 5.0e-84 315.5 329 54.4
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.5e-84 314.7 328 58.8
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.1e-83 314.3 321 50.2
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.1e-83 314.3 316 54.4
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.4e-83 313.9 322 51.9
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.4e-83 313.9 322 50.9
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 5.5e-83 312.0 318 52.5
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 1.2e-82 310.8 335 48.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 1.6e-82 310.5 332 50.0
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 3.6e-82 309.3 323 55.4
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 7.9e-82 308.1 334 48.5
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 1.0e-81 307.8 322 52.5
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.4e-81 307.4 323 51.7
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 5.1e-81 305.4 299 51.8
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.1e-81 305.4 321 50.2
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.5e-80 303.9 318 52.8
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 2.0e-80 303.5 332 49.4
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 5.7e-80 302.0 318 49.1
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 9.7e-80 301.2 330 49.1
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 2.2e-79 300.1 319 55.8
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.7e-79 299.3 321 48.9
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 4.8e-79 298.9 352 54.5
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 6.3e-79 298.5 324 46.9
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 8.2e-79 298.1 312 59.0
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 8.2e-79 298.1 321 48.9
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.8e-78 297.0 328 54.0
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.4e-78 296.6 321 52.3
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 2.4e-78 296.6 329 47.1
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 4.1e-78 295.8 323 53.3
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 4.1e-78 295.8 325 51.4
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 1.2e-77 294.3 329 45.3
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 4.5e-77 292.4 324 49.1
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 7.7e-77 291.6 323 48.3
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.3e-76 290.8 322 46.3
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 2.9e-76 289.7 322 45.0
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 3.8e-76 289.3 230 60.0
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.1e-75 287.7 295 51.9
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.9e-75 287.0 328 47.9
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.9e-75 287.0 347 46.4
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 2.5e-75 286.6 323 50.2
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 7.2e-75 285.0 322 44.1
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 9.4e-75 284.6 322 45.7
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.6e-74 283.9 336 45.5
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 8.0e-74 281.6 322 44.4
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 8.0e-74 281.6 336 47.6
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 8.0e-74 281.6 322 43.8
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 1.0e-73 281.2 322 47.2
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 1.0e-73 281.2 322 44.1
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 1.4e-73 280.8 327 46.8
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.4e-73 280.8 373 43.4
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.8e-73 280.4 323 44.0
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.8e-73 280.4 294 51.0
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 2.3e-73 280.0 327 45.3
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 2.3e-73 280.0 334 44.3
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 4.0e-73 279.3 329 49.5
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 8.8e-73 278.1 322 43.2
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-72 277.7 322 43.5
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.5e-72 277.3 322 43.2
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 2.0e-72 276.9 234 55.6
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 1.3e-71 274.2 311 46.3
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 2.8e-71 273.1 322 44.7
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.7e-71 272.7 332 43.7
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 4.8e-71 272.3 323 45.8
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 4.8e-71 272.3 322 56.2
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 1.1e-70 271.2 323 45.2
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 2.0e-69 266.9 247 51.4
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 2.0e-69 266.9 247 51.4
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 2.7e-69 266.5 249 51.4
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 2.7e-69 266.5 249 51.4
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 2.7e-69 266.5 322 42.5
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 1.7e-68 263.8 327 44.6
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 6.5e-68 261.9 364 42.0
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.5e-67 260.8 279 49.8
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 9.4e-67 258.1 330 51.2
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 4.4e-64 249.2 279 49.1
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 1.4e-57 227.6 329 44.1
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 9.8e-56 221.5 332 38.6
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 4.9e-55 219.2 186 55.4
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 2.4e-54 216.9 231 66.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.3e-52 211.1 332 38.6
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 8.9e-49 198.4 325 40.6
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.7e-48 195.7 327 41.3
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 6.4e-47 192.2 213 47.9
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 6.4e-47 192.2 190 50.0
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 3.2e-46 189.9 220 46.8
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 3.0e-44 183.3 480 29.6
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 1.1e-43 181.4 317 39.1
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 1.9e-43 180.6 317 35.0
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 3.3e-43 179.9 279 40.1
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 5.2e-41 172.6 298 37.9
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 6.4e-39 165.6 327 31.2
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-36 157.9 145 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 4.3e-35 152.9 317 30.6
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.5e-32 144.4 329 35.9
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 4.1e-30 136.3 264 36.4
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.5e-27 127.1 114 57.9
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 1.6e-26 124.4 109 52.3
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.5e-19 101.3 244 32.4
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.8e-18 97.1 78 59.0
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-17 95.1 198 30.3
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.0e-17 93.2 164 51.2
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 1.9e-14 84.3 160 35.6
SMO367G1182 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.0e-12 78.6 181 32.6
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 1.8e-09 67.8 118 40.7
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 3.1e-09 67.0 224 28.1
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 3.1e-09 67.0 234 26.5
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 2.9e-07 60.5 114 53.5
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.2e-06 56.6 56 44.6


User provided reference genes

Program Settings