Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-197 693.0 380 100.0
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.0e-186 656.8 380 96.3
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 1.5e-113 413.7 326 66.3
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.4e-113 412.5 366 62.8
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 7.7e-113 411.4 316 66.8
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 2.7e-110 402.9 306 69.9
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 4.3e-108 395.6 329 65.0
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 3.1e-106 389.4 378 59.5
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 9.1e-106 387.9 313 64.9
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 3.8e-104 382.5 329 64.4
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 4.7e-102 375.6 368 58.2
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.1e-98 364.4 417 53.5
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 4.1e-98 362.5 399 52.4
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 2.2e-96 356.7 384 54.2
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 8.5e-96 354.8 309 59.2
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 4.2e-95 352.4 312 60.9
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 1.8e-93 347.1 316 60.4
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.3e-93 346.7 389 54.0
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 3.9e-93 345.9 371 54.2
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 6.7e-93 345.1 370 54.3
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 6.7e-93 345.1 298 62.1
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 6.7e-93 345.1 366 53.6
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.5e-92 344.0 330 57.0
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 5.7e-92 342.0 326 58.3
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 7.4e-92 341.7 375 55.5
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 8.2e-91 338.2 384 53.1
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 3.1e-90 336.3 371 51.5
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.6e-89 334.0 330 55.8
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 2.0e-89 333.6 309 57.6
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 3.5e-89 332.8 301 60.5
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 5.9e-89 332.0 304 58.6
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 7.7e-89 331.6 372 52.2
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 3.8e-88 329.3 308 59.1
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 2.1e-86 323.6 330 56.4
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 6.1e-86 322.0 330 55.2
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 1.8e-85 320.5 304 55.3
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.0e-85 319.7 362 49.7
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 2.0e-84 317.0 298 56.4
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 2.6e-84 316.6 323 54.5
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.4e-84 315.8 310 58.7
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 5.7e-84 315.5 305 57.0
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 9.7e-84 314.7 323 54.5
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 9.7e-84 314.7 322 56.8
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 4.8e-83 312.4 303 58.1
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 1.8e-82 310.5 324 54.0
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 7.0e-82 308.5 306 57.5
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 7.0e-82 308.5 411 47.7
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 1.2e-81 307.8 307 57.7
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 4.5e-81 305.8 375 48.5
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 7.7e-81 305.1 353 47.9
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.3e-80 304.3 315 55.2
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 5.0e-80 302.4 310 53.5
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 5.5e-79 298.9 305 56.1
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.2e-78 297.7 294 57.8
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.7e-78 296.6 306 56.9
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.3e-75 287.7 309 54.0
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.3e-75 287.7 366 48.4
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 3.1e-74 283.1 342 49.1
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 9.1e-74 281.6 252 58.3
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.6e-73 280.8 383 44.9
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 2.3e-72 276.9 296 53.7
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 2.3e-72 276.9 297 52.9
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 3.8e-72 276.2 309 50.8
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 5.0e-72 275.8 364 51.6
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 6.6e-72 275.4 303 51.2
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 9.5e-71 271.6 312 51.9
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 1.2e-70 271.2 297 52.5
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 1.2e-70 271.2 297 52.5
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 4.7e-70 269.2 346 48.0
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 1.0e-69 268.1 379 45.6
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 6.8e-69 265.4 319 49.2
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 1.2e-68 264.6 332 48.2
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 2.6e-68 263.5 311 50.8
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 2.8e-67 260.0 389 46.3
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 2.4e-66 256.9 233 61.8
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 2.7e-65 253.4 347 49.0
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-63 248.1 372 42.7
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 4.7e-62 242.7 305 46.2
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 5.8e-60 235.7 328 45.7
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 5.4e-58 229.2 344 43.6
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 7.0e-58 228.8 277 47.3
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 9.5e-55 218.4 275 51.6
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.6e-54 217.6 374 42.0
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.0e-53 213.0 314 47.1
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 8.9e-53 211.8 175 63.4
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 2.0e-52 210.7 307 45.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 3.4e-52 209.9 345 44.3
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.2e-49 201.4 314 47.5
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.6e-49 201.1 337 44.2
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 2.5e-47 193.7 227 54.6
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 4.3e-47 193.0 294 44.2
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 3.6e-46 189.9 316 43.7
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.7e-43 181.0 331 42.9
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 1.7e-43 181.0 198 47.5
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 1.7e-43 181.0 326 42.0
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 4.1e-42 176.4 296 42.2
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 5.4e-42 176.0 231 48.9
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 1.2e-41 174.9 327 41.9
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 5.1e-40 169.5 328 41.5
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-39 168.3 313 41.9
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 1.5e-39 167.9 329 40.4
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 1.5e-39 167.9 323 42.7
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.6e-39 166.0 283 43.8
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 1.4e-37 161.4 327 41.0
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 4.0e-37 159.8 234 46.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.7e-35 154.5 299 42.8
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 2.9e-35 153.7 305 39.7
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 4.9e-35 152.9 303 40.3
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.4e-34 149.4 294 40.8
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 4.6e-33 146.4 319 40.4
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 7.8e-33 145.6 310 38.7
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 1.7e-32 144.4 311 36.3
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 4.3e-31 139.8 325 38.8
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 6.2e-30 136.0 294 38.8
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 2.0e-28 131.0 309 36.6
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.9e-27 127.1 281 38.1
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 2.9e-27 127.1 318 35.5
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.2e-26 123.2 178 42.7
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 1.2e-25 121.7 314 37.6
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 1.2e-25 121.7 314 37.6
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 2.7e-25 120.6 321 36.4
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 1.5e-23 114.8 325 36.3
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 1.3e-22 111.7 297 36.0
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.5e-20 104.8 316 33.9
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 5.4e-18 96.3 307 35.5
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 3.7e-14 83.6 100 52.0
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 3.4e-12 77.0 166 38.0
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 1.4e-10 71.6 145 37.9
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 1.9e-10 71.2 240 33.3
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 3.2e-10 70.5 37 75.7
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.3e-06 58.5 37 64.9
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.6e-06 58.2 34 67.6
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.6e-06 58.2 38 60.5
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.1e-06 57.8 38 60.5
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 4.8e-06 56.6 38 60.5
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 6.2e-06 56.2 39 66.7
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 6.2e-06 56.2 38 60.5
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 8.2e-06 55.8 38 63.2
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 8.2e-06 55.8 34 58.8


User provided reference genes

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