Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 1.2e-146 523.1 261 100.0
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 4.9e-143 511.1 270 94.8
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 1.4e-110 403.3 261 78.2
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 4.2e-110 401.7 267 75.7
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 2.7e-109 399.1 251 79.3
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 4.6e-109 398.3 256 78.5
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 8.7e-108 394.0 257 75.9
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 2.6e-104 382.5 257 77.4
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 1.3e-103 380.2 251 74.9
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 9.3e-102 374.0 206 84.5
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 1.2e-101 373.6 199 85.4
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 1.6e-101 373.2 202 86.1
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 2.1e-101 372.9 250 75.2
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 3.5e-101 372.1 251 73.7
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 4.6e-101 371.7 244 74.2
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 6.0e-101 371.3 256 74.6
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 1.0e-100 370.5 257 71.2
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 1.0e-100 370.5 257 71.6
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 3.0e-100 369.0 259 72.2
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 6.7e-100 367.9 256 70.7
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 8.7e-100 367.5 259 70.7
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 1.1e-99 367.1 254 70.1
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 1.9e-99 366.3 259 71.0
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 1.9e-99 366.3 230 77.4
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 4.3e-99 365.2 232 75.9
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 5.6e-99 364.8 263 68.4
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 5.6e-99 364.8 257 71.2
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 7.4e-99 364.4 223 80.3
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 1.3e-98 363.6 246 72.0
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 1.6e-98 363.2 199 83.9
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 1.6e-98 363.2 247 71.7
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 2.8e-98 362.5 234 74.8
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 8.1e-98 360.9 196 85.7
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 8.1e-98 360.9 249 71.5
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 1.4e-97 360.1 200 83.0
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 1.4e-97 360.1 254 71.7
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 1.4e-97 360.1 276 67.4
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 1.4e-97 360.1 276 67.4
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 1.8e-97 359.8 241 74.3
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 2.4e-97 359.4 197 87.3
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 2.4e-97 359.4 259 70.3
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 3.1e-97 359.0 196 84.7
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 3.1e-97 359.0 263 68.1
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 4.0e-97 358.6 227 75.8
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 9.0e-97 357.5 197 86.3
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 9.0e-97 357.5 197 86.3
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 9.0e-97 357.5 193 85.0
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 1.2e-96 357.1 269 67.3
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 2.0e-96 356.3 197 85.8
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 2.6e-96 355.9 199 83.9
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 3.4e-96 355.5 247 72.1
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 4.5e-96 355.1 208 79.3
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 5.8e-96 354.8 241 71.0
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 5.8e-96 354.8 197 85.8
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 5.8e-96 354.8 241 74.7
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 2.2e-95 352.8 260 68.8
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 1.9e-94 349.7 246 69.5
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 2.5e-94 349.4 247 68.4
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 3.2e-94 349.0 236 75.0
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 4.2e-94 348.6 194 83.0
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 9.3e-94 347.4 232 72.0
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 9.3e-94 347.4 250 69.2
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 1.2e-93 347.1 231 70.1
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 4.6e-93 345.1 203 77.3
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 1.3e-92 343.6 203 76.8
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 3.9e-92 342.0 203 77.3
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 3.9e-92 342.0 193 80.3
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 5.1e-92 341.7 250 68.0
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 1.5e-91 340.1 231 71.0
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 1.5e-91 340.1 257 66.5
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 3.3e-91 339.0 204 76.5
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 3.3e-91 339.0 204 76.5
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 7.4e-91 337.8 233 69.1
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 3.7e-90 335.5 245 70.2
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 4.8e-90 335.1 196 78.1
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 1.1e-89 334.0 188 80.3
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 1.4e-89 333.6 272 64.0
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 1.5e-88 330.1 202 76.2
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 3.4e-88 328.9 266 64.3
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 5.9e-88 328.2 214 73.4
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 8.4e-87 324.3 193 74.6
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 2.7e-85 319.3 203 73.4
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 3.9e-84 315.5 232 69.8
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 1.3e-82 310.5 169 85.2
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 1.6e-82 310.1 204 68.6
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 2.4e-81 306.2 249 62.2
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 1.1e-78 297.4 203 68.0
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 3.2e-78 295.8 171 78.9
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 2.7e-77 292.7 268 58.2
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 2.7e-77 292.7 268 59.0
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 3.9e-76 288.9 276 55.8
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 3.3e-75 285.8 280 57.1
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 5.7e-75 285.0 163 78.5
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 7.4e-75 284.6 164 77.4
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 9.7e-75 284.3 185 68.6
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 1.5e-72 276.9 207 69.6
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 1.6e-69 266.9 211 65.9
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 3.3e-59 232.6 174 71.3
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 5.7e-59 231.9 124 87.9
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 4.5e-56 222.2 233 56.2
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 3.8e-55 219.2 121 81.0
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 5.7e-51 205.3 121 76.0
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 9.8e-51 204.5 208 55.8
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 5.4e-49 198.7 143 73.4
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 5.9e-48 195.3 257 46.7
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 1.1e-46 191.0 163 65.0
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 1.4e-44 184.1 103 83.5
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 5.9e-40 168.7 91 83.5
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 6.6e-39 165.2 481 30.6
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 6.4e-34 148.7 217 43.8
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.2e-32 144.4 73 84.9
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 9.5e-30 134.8 76 78.9
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 6.8e-28 128.6 72 76.4
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 4.6e-16 89.4 96 51.0
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-08 63.5 37 83.8


User provided reference genes

Program Settings