Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 4.7e-183 644.4 332 100.0
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 3.5e-162 575.1 332 91.6
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 7.4e-120 434.5 331 69.5
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 4.0e-118 428.7 332 67.8
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 2.3e-113 412.9 331 65.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 5.1e-113 411.8 314 70.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.3e-111 407.1 331 65.0
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 4.8e-103 378.6 300 69.7
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 7.7e-101 371.3 364 57.7
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 8.5e-100 367.9 327 62.1
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 4.7e-98 362.1 328 60.4
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.8e-97 360.1 328 59.8
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 2.3e-97 359.8 332 59.6
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 4.4e-96 355.5 327 59.6
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 5.3e-94 348.6 328 57.9
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.5e-93 347.1 327 59.6
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 3.4e-93 345.9 330 57.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 5.9e-93 345.1 331 60.1
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 5.9e-93 345.1 327 59.6
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 2.2e-92 343.2 333 58.0
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 3.8e-92 342.4 329 56.2
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 5.0e-92 342.0 327 59.0
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.4e-91 340.5 275 62.2
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 3.2e-91 339.3 328 57.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 5.5e-91 338.6 332 57.2
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 9.4e-91 337.8 303 61.1
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-90 337.4 335 56.7
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 2.7e-90 336.3 339 55.2
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.6e-90 335.9 342 54.7
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.1e-90 335.1 328 55.8
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-89 334.3 328 56.1
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.8e-89 333.6 327 57.2
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 3.0e-89 332.8 327 57.2
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 3.9e-89 332.4 326 55.8
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 5.2e-89 332.0 342 54.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.7e-89 331.6 347 54.2
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.1e-88 330.9 331 57.1
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.5e-88 330.5 304 57.6
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 5.3e-86 322.0 326 56.1
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.1e-86 321.2 253 64.8
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 4.5e-85 318.9 341 52.2
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 5.9e-85 318.5 330 55.2
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 1.0e-84 317.8 329 54.4
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.7e-84 317.0 341 52.2
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.2e-84 316.6 341 52.5
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 5.0e-84 315.5 325 54.2
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.1e-83 314.3 326 54.6
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 1.1e-83 314.3 326 54.6
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.9e-83 313.5 342 51.2
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 3.2e-83 312.8 340 51.2
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 5.5e-83 312.0 341 52.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.2e-82 310.8 345 50.7
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 6.1e-82 308.5 393 47.1
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.0e-81 307.8 285 56.8
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.4e-81 307.4 326 53.4
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.8e-81 307.0 344 51.7
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 2.3e-81 306.6 241 64.7
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 4.0e-81 305.8 306 55.2
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 4.0e-81 305.8 241 63.5
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 5.2e-81 305.4 334 52.7
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 6.7e-81 305.1 342 50.3
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 6.7e-81 305.1 260 61.2
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.2e-80 304.3 357 49.3
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.2e-80 304.3 328 54.0
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 2.0e-80 303.5 357 49.0
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-80 303.1 342 50.6
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 3.3e-80 302.8 283 56.2
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 3.3e-80 302.8 255 59.2
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.7e-79 299.3 329 52.3
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 3.1e-78 296.2 252 57.9
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 3.5e-77 292.7 303 56.4
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.8e-76 289.3 219 64.4
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 6.5e-76 288.5 260 58.5
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.2e-74 284.3 325 51.7
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 2.3e-73 280.0 223 58.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 5.2e-73 278.9 359 48.2
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 2.0e-72 276.9 232 60.3
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 7.5e-72 275.0 314 52.5
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.7e-71 273.9 283 52.3
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 5.4e-70 268.9 310 52.6
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 2.7e-69 266.5 200 66.5
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.5e-69 266.2 223 58.3
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 2.9e-68 263.1 302 51.7
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.1e-67 261.2 333 48.3
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.5e-67 260.8 223 61.9
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.6e-66 256.1 304 50.3
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 4.9e-63 245.7 471 37.6
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.4e-57 227.6 203 57.6
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 1.1e-51 208.0 298 44.6
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.1e-49 201.4 282 46.5
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 1.1e-49 201.4 231 44.6
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 8.9e-49 198.4 249 45.4
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 4.4e-48 196.1 258 47.3
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.4e-46 191.0 234 41.0
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.9e-46 190.7 231 43.7
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 5.4e-46 189.1 173 56.6
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 4.3e-43 179.5 182 50.5
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.6e-42 177.6 224 46.4
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.3e-41 173.7 231 42.0
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 4.4e-40 169.5 245 47.3
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 1.3e-39 167.9 183 50.8
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 5.4e-38 162.5 286 40.9
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.5e-35 153.7 314 37.6
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 5.6e-35 152.5 179 48.6
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 3.8e-31 139.8 150 54.0
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.2e-29 134.8 178 42.1
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 6.6e-28 129.0 281 37.7
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 1.2e-24 118.2 68 76.5
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 4.2e-22 109.8 71 66.2
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 2.8e-18 97.1 57 84.2
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 2.8e-18 97.1 234 26.9
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.6e-13 81.3 137 40.1
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 6.2e-10 69.3 50 66.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 3.1e-09 67.0 96 39.6
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 5.3e-09 66.2 50 64.0
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.5e-08 64.7 52 59.6
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 4.5e-08 63.2 46 58.7
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 9.9e-08 62.0 140 32.1
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 1.1e-06 58.5 72 50.0


User provided reference genes

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