Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 2.7e-141 505.4 265 100.0
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 2.4e-12 77.0 51 78.4
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 4.1e-12 76.3 38 100.0
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 4.1e-12 76.3 38 100.0
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 4.1e-12 76.3 38 100.0
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 5.3e-12 75.9 38 97.4
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 5.3e-12 75.9 38 97.4
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 5.3e-12 75.9 39 94.9
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 6.9e-12 75.5 38 97.4
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 6.9e-12 75.5 95 51.6
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.2e-11 74.7 38 97.4
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 1.2e-11 74.7 38 97.4
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.2e-11 74.7 38 94.7
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.2e-11 74.7 38 94.7
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 1.5e-11 74.3 39 92.3
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.5e-11 74.3 38 94.7
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.5e-11 74.3 38 97.4
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.0e-11 73.9 38 97.4
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 2.0e-11 73.9 40 90.0
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.6e-11 73.6 38 94.7
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.6e-11 73.6 38 92.1
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 2.6e-11 73.6 38 94.7
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 2.6e-11 73.6 41 87.8
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.4e-11 73.2 38 94.7
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.4e-11 73.2 38 94.7
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 3.4e-11 73.2 38 97.4
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.4e-11 73.2 38 97.4
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 3.4e-11 73.2 38 97.4
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 3.4e-11 73.2 38 92.1
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 4.5e-11 72.8 42 85.7
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 5.9e-11 72.4 123 39.8
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 5.9e-11 72.4 38 92.1
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 7.7e-11 72.0 38 92.1
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 7.7e-11 72.0 38 94.7
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 1.0e-10 71.6 55 69.1
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 1.0e-10 71.6 38 92.1
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.0e-10 71.6 38 92.1
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.0e-10 71.6 38 89.5
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.3e-10 71.2 38 92.1
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.3e-10 71.2 38 92.1
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-10 71.2 38 94.7
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.3e-10 71.2 42 83.3
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.3e-10 71.2 38 89.5
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.7e-10 70.9 41 85.4
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.7e-10 70.9 38 92.1
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 1.7e-10 70.9 38 92.1
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 1.7e-10 70.9 38 92.1
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.2e-10 70.5 39 92.3
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.2e-10 70.5 38 89.5
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.2e-10 70.5 38 89.5
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 2.2e-10 70.5 38 89.5
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 2.2e-10 70.5 38 89.5
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.9e-10 70.1 38 89.5
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.9e-10 70.1 38 92.1
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 2.9e-10 70.1 38 92.1
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.9e-10 70.1 38 86.8
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 2.9e-10 70.1 38 89.5
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 3.8e-10 69.7 38 92.1
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 3.8e-10 69.7 41 82.9
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 5.0e-10 69.3 38 94.7
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 5.0e-10 69.3 38 89.5
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.0e-10 69.3 38 89.5
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 6.5e-10 68.9 38 89.5
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 8.5e-10 68.6 38 86.8
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 8.5e-10 68.6 38 84.2
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 8.5e-10 68.6 38 86.8
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 8.5e-10 68.6 38 89.5
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 8.5e-10 68.6 38 89.5
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 8.5e-10 68.6 38 92.1
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.1e-09 68.2 53 69.8
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.1e-09 68.2 38 92.1
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 1.4e-09 67.8 38 86.8
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.4e-09 67.8 57 59.6
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 1.4e-09 67.8 38 92.1
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.9e-09 67.4 39 82.1
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.9e-09 67.4 38 89.5
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.9e-09 67.4 38 89.5
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 1.9e-09 67.4 38 89.5
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 2.5e-09 67.0 38 86.8
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 2.5e-09 67.0 38 84.2
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 2.5e-09 67.0 49 71.4
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 3.2e-09 66.6 37 91.9
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 3.2e-09 66.6 38 89.5
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 5.5e-09 65.9 38 86.8
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 5.5e-09 65.9 44 72.7
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 5.5e-09 65.9 38 84.2
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 7.2e-09 65.5 38 86.8
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 7.2e-09 65.5 38 84.2
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 9.4e-09 65.1 48 68.8
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 9.4e-09 65.1 38 86.8
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 1.2e-08 64.7 38 86.8
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.6e-08 64.3 45 75.6
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.6e-08 64.3 45 73.3
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 2.1e-08 63.9 45 71.1
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.7e-08 63.5 38 84.2
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 2.7e-08 63.5 38 78.9
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 4.7e-08 62.8 35 88.6
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 6.1e-08 62.4 38 78.9
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 6.1e-08 62.4 45 68.9
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 7.9e-08 62.0 38 78.9
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.0e-07 61.6 35 88.6
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 1.0e-07 61.6 38 78.9
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 1.0e-07 61.6 62 59.7
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 1.0e-07 61.6 43 74.4
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 1.4e-07 61.2 41 78.0
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 1.4e-07 61.2 41 78.0
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.8e-07 60.8 45 66.7
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 1.8e-07 60.8 45 66.7
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 1.8e-07 60.8 38 78.9
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 3.0e-07 60.1 38 81.6
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 3.0e-07 60.1 38 81.6
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 3.0e-07 60.1 38 81.6
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 3.0e-07 60.1 45 66.7
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 3.0e-07 60.1 38 81.6
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 3.0e-07 60.1 38 76.3
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 3.0e-07 60.1 36 80.6
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 5.1e-07 59.3 38 78.9
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 5.1e-07 59.3 38 78.9
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 6.7e-07 58.9 38 81.6
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 6.7e-07 58.9 38 81.6
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 8.8e-07 58.5 38 78.9
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 8.8e-07 58.5 38 76.3
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.1e-06 58.2 42 69.0
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.1e-06 58.2 38 76.3
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 1.5e-06 57.8 37 78.4
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.0e-06 57.4 38 73.7
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.0e-06 57.4 38 76.3
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 2.0e-06 57.4 38 78.9
arahy.Tifrunner.gnm1.ann1.50HBEA Arachis hypogaea HOM05D004818 ORTHO05D005444 2.6e-06 57.0 123 45.5
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 3.3e-06 56.6 34 82.4
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 3.3e-06 56.6 38 76.3
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 4.4e-06 56.2 38 76.3
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 4.4e-06 56.2 38 76.3
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 4.4e-06 56.2 38 76.3
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 4.4e-06 56.2 38 76.3
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 4.4e-06 56.2 38 76.3
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 5.7e-06 55.8 34 82.4
Hund00173 Selenicereus undatus HOM05D004818 ORTHO05D005444 7.4e-06 55.5 41 68.3
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 7.4e-06 55.5 38 73.7
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 7.4e-06 55.5 34 79.4


User provided reference genes

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