Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LR7EIQ Arachis hypogaea HOM05D007157 ORTHO05D009045 1.7e-290 1002.3 651 100.0
arahy.Tifrunner.gnm1.ann1.VP4GDR Arachis hypogaea HOM05D007157 ORTHO05D009045 2.3e-282 975.3 648 97.8
Glyma.16G053700 Glycine max HOM05D007157 ORTHO05D009045 2.5e-172 609.8 636 72.5
Lalb_Chr00c01g0403821 Lupinus albus HOM05D007157 ORTHO05D009045 6.8e-170 601.7 646 70.7
VMungo1383G0567 Vigna mungo HOM05D007157 ORTHO05D009045 2.8e-163 579.7 645 67.8
Lj1g0010660 Lotus japonicus HOM05D007157 ORTHO05D009045 3.8e-152 542.7 662 62.7
TPR.G8553 Trifolium pratense HOM05D007157 ORTHO05D009045 2.6e-145 520.0 639 64.8
MD09G1008000 Malus domestica HOM05D007157 ORTHO05D009045 1.3e-144 517.7 635 59.8
Medtr7g027940 Medicago truncatula HOM05D007157 ORTHO05D009045 3.5e-142 509.6 637 63.7
FAN05G0711 Fragaria x ananassa HOM05D007157 ORTHO05D009045 3.9e-141 506.1 631 61.6
FvH4_6g53850 Fragaria vesca HOM05D007157 ORTHO05D009045 6.7e-141 505.4 631 61.5
FAN14G2967 Fragaria x ananassa HOM05D007157 ORTHO05D009045 6.7e-141 505.4 631 61.5
Prupe.3G308900 Prunus persica HOM05D007157 ORTHO05D009045 9.6e-140 501.5 635 61.1
Haze_14901 Corylus avellana HOM05D007157 ORTHO05D009045 1.6e-139 500.7 639 62.6
RcHm_v2.0_Chr2g0175991 Rosa chinensis HOM05D007157 ORTHO05D009045 1.6e-139 500.7 631 61.2
Cfa007204 Carpinus fangiana HOM05D007157 ORTHO05D009045 6.2e-139 498.8 639 63.1
TPR.G29476 Trifolium pratense HOM05D007157 ORTHO05D009045 1.0e-136 491.5 654 58.6
CANSAT64G2603 Cannabis sativa HOM05D007157 ORTHO05D009045 3.8e-136 489.6 632 61.7
Glyma.19G095500 Glycine max HOM05D007157 ORTHO05D009045 5.9e-129 465.7 575 55.5
Atru.chr6.2599 Acer truncatum HOM05D007157 ORTHO05D009045 2.2e-128 463.8 636 61.6
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 2.9e-128 463.4 633 62.6
Phvul.001G089400 Phaseolus vulgaris HOM05D007157 ORTHO05D009045 7.2e-127 458.8 401 60.6
Rhsim10G0004500 Rhododendron simsii HOM05D007157 ORTHO05D009045 1.2e-126 458.0 638 59.1
TWI34G0589 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 3.6e-126 456.4 639 61.7
TWI34G1752 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 3.6e-126 456.4 639 61.7
Dinv25644 Davidia involucrata HOM05D007157 ORTHO05D009045 7.9e-126 455.3 638 60.8
Manes.04G088300 Manihot esculenta HOM05D007157 ORTHO05D009045 7.9e-126 455.3 642 61.8
FAN02G1074 Fragaria x ananassa HOM05D007157 ORTHO05D009045 2.5e-124 450.3 635 54.8
CiPaw.03G058300 Carya illinoinensis HOM05D007157 ORTHO05D009045 3.3e-124 449.9 633 61.6
Peaxi162Scf00420g00637 Petunia axillaris HOM05D007157 ORTHO05D009045 4.8e-123 446.0 638 55.8
Sopen02g038950 Solanum pennellii HOM05D007157 ORTHO05D009045 4.1e-122 443.0 635 56.4
CAN.G473.124 Capsicum annuum HOM05D007157 ORTHO05D009045 9.1e-122 441.8 637 57.0
Solyc02g094310.3 Solanum lycopersicum HOM05D007157 ORTHO05D009045 9.1e-122 441.8 635 55.4
Lj5A824G14 Lonicera japonica HOM05D007157 ORTHO05D009045 4.5e-121 439.5 643 57.2
Oeu048928.2 Olea europaea HOM05D007157 ORTHO05D009045 4.5e-121 439.5 634 59.3
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 1.0e-120 438.3 629 60.6
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 1.3e-120 438.0 642 61.2
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 5.0e-120 436.0 636 56.9
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 1.4e-119 434.5 637 60.6
PGSC0003DMG400020245 Solanum tuberosum HOM05D007157 ORTHO05D009045 1.4e-119 434.5 636 56.3
ClCG11G009400 Citrullus lanatus HOM05D007157 ORTHO05D009045 1.4e-117 427.9 631 57.5
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 3.0e-117 426.8 631 59.9
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 3.3e-116 423.3 637 60.1
Sed0017582 Sechium edule HOM05D007157 ORTHO05D009045 3.7e-115 419.9 635 57.6
Nitab4.5_0005858g0130 Nicotiana tabacum HOM05D000485 ORTHO05D009045 6.3e-115 419.1 631 41.2
MSTRG.23478 Avicennia marina HOM05D007157 ORTHO05D009045 8.2e-115 418.7 642 57.6
Eucgr.H03351 Eucalyptus grandis HOM05D007157 ORTHO05D009045 2.0e-113 414.1 636 58.2
Gohir.D04G075000 Gossypium hirsutum HOM05D007157 ORTHO05D009045 3.8e-112 409.8 636 59.3
Sc03g0006270 Simmondsia chinensis HOM05D007157 ORTHO05D009045 1.9e-111 407.5 636 57.1
Sabra16G0209300 Salix brachista HOM05D007157 ORTHO05D009045 7.2e-111 405.6 636 58.8
Cpa.g.c35912 Carica papaya HOM05D007157 ORTHO05D009045 1.2e-110 404.8 409 55.0
Nitab4.5_0000519g0020 Nicotiana tabacum HOM05D007157 ORTHO05D009045 2.1e-110 404.1 631 55.8
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 6.1e-110 402.5 636 58.2
CsaV3_2G034000 Cucumis sativus L. HOM05D007157 ORTHO05D009045 8.0e-110 402.1 405 50.4
DCAR_021804 Daucus carota HOM05D007157 ORTHO05D009045 8.8e-109 398.7 638 54.5
Migut.H00838 Erythranthe guttata HOM05D007157 ORTHO05D009045 2.0e-108 397.5 616 59.1
GSVIVG01033052001 Vitis vinifera HOM05D007157 ORTHO05D009045 4.4e-108 396.4 637 57.5
AUR62003414 Chenopodium quinoa HOM05D000173 ORTHO05D006747 1.3e-107 394.8 646 54.0
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 4.8e-107 392.9 636 58.2
MELO3C008172.2 Cucumis melo HOM05D007157 ORTHO05D009045 4.1e-106 389.8 404 49.3
Potri.001G326800 Populus trichocarpa HOM05D007157 ORTHO05D009045 2.0e-105 387.5 636 54.9
PSO017G3067 Papaver somniferum HOM05D007157 ORTHO05D009045 7.7e-105 385.6 410 51.5
Aqoxy5G03262 Aquilegia oxysepala HOM05D007157 ORTHO05D009045 1.3e-104 384.8 639 57.1
EL10Ac6g15443 Beta vulgaris HOM05D007157 ORTHO05D009045 7.2e-103 379.0 638 55.3
Lsat_1_v5_gn_0_3360 Lactuca sativa HOM05D007157 ORTHO05D009045 7.2e-103 379.0 643 55.5
AUR62029427 Chenopodium quinoa HOM05D007157 ORTHO05D009045 1.2e-102 378.3 416 49.8
AL6G24740 Arabidopsis lyrata HOM05D007157 ORTHO05D009045 3.6e-102 376.7 635 53.1
QL02p070811 Quercus lobata HOM05D007157 ORTHO05D009045 4.7e-102 376.3 639 56.8
Sp6g29920 Schrenkiella parvula HOM05D007157 ORTHO05D009045 1.3e-99 368.2 635 52.3
HanXRQChr17g0551661 Helianthus annuus HOM05D007157 ORTHO05D009045 3.7e-99 366.7 397 52.9
Aa31LG11G14870 Aethionema arabicum HOM05D007157 ORTHO05D009045 7.0e-98 362.5 664 50.8
Psat3g167400 Pisum sativum HOM05D007157 ORTHO05D009045 7.7e-97 359.0 455 70.1
C09p63050 Brassica napus HOM05D007157 ORTHO05D009045 3.8e-96 356.7 635 49.8
Ca_12649_v3 Cicer arietinum L. HOM05D007157 ORTHO05D009045 5.0e-96 356.3 455 66.2
BolC9t59142H Brassica oleracea HOM05D007157 ORTHO05D009045 1.6e-94 351.3 635 49.8
vmacro05975 Vaccinium macrocarpon HOM05D007157 ORTHO05D009045 2.7e-94 350.5 605 55.2
A10p24350 Brassica napus HOM05D007157 ORTHO05D009045 2.3e-93 347.4 414 46.4
Thhalv10012953m.g Eutrema salsugineum HOM05D007157 ORTHO05D009045 5.2e-93 346.3 412 46.1
Carub.0006s1227 Capsella rubella HOM05D007157 ORTHO05D009045 6.8e-93 345.9 634 52.5
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 1.5e-92 344.7 414 46.1
Lj5A791T21 Lonicera japonica HOM05D007157 ORTHO05D009045 1.1e-90 338.6 643 51.6
ECA246G1262 Erigeron canadensis HOM05D000482 ORTHO05D000349 2.4e-90 337.4 530 57.7
SHI04033 Sapria himalayana HOM05D007157 ORTHO05D009045 3.1e-90 337.0 631 35.0
Ah.03g148180 Amaranthus hybridus HOM05D007157 ORTHO05D009045 4.1e-90 336.7 632 42.9
AT5G14080 Arabidopsis thaliana HOM05D007157 ORTHO05D009045 5.4e-90 336.3 636 52.0
SalBow3G1100 Salvia bowleyana HOM05D007157 ORTHO05D009045 1.5e-87 328.2 613 54.6
CARHR199280 Cardamine hirsuta HOM05D007157 ORTHO05D009045 2.5e-87 327.4 634 51.6
THA.LOC104802372 Tarenaya hassleriana HOM05D007157 ORTHO05D009045 2.1e-86 324.3 407 45.5
SalBow3G1401 Salvia bowleyana HOM05D007157 ORTHO05D009045 2.8e-86 323.9 613 54.3
ATR0012G053 Amborella trichopoda HOM05D007157 ORTHO05D009045 2.6e-84 317.4 395 45.8
SGA_v2.0_scaffold211G42168 Striga asiatica HOM05D007157 ORTHO05D009045 7.3e-79 299.3 386 46.4
CDE01G0454 Ceratophyllum demersum HOM05D007157 ORTHO05D009045 4.4e-76 290.0 629 48.3
PGR083G0651 Punica granatum HOM05D007157 ORTHO05D009045 2.3e-72 277.7 417 41.5
Hma1.2p1_0812F.1_g222250 Hydrangea macrophylla HOM05D007157 ORTHO05D009045 1.9e-71 274.6 456 61.4
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 2.2e-67 261.2 322 47.5
FAN09G1907 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.4e-66 258.5 280 53.9
FAN09G1568 Fragaria x ananassa HOM05D007157 ORTHO05D009045 8.3e-59 232.6 349 66.5
Zm00001eb093300 Zea mays HOM05D007157 ORTHO05D009045 5.1e-56 223.4 336 41.7
Hund04273 Selenicereus undatus HOM05D007157 ORTHO05D009045 1.6e-54 218.4 605 42.8
HPP92_009778 Vanilla planifolia HOM05D007157 ORTHO05D009045 4.4e-52 210.3 259 43.2
BcaC02g07725 Brassica carinata HOM05D007157 ORTHO05D009045 9.2e-50 202.6 285 41.8
TAR375G0551 Trochodendron aralioides HOM05D007157 ORTHO05D009045 3.5e-41 174.1 153 56.9
BolC4t27904H Brassica oleracea HOM05D007157 ORTHO05D009045 1.7e-40 171.8 285 37.5
Cc00_g20250 Coffea canephora HOM05D007157 ORTHO05D009045 1.2e-36 159.1 363 59.2
Lj8P534T4 Lonicera japonica HOM05D007157 ORTHO05D009045 1.1e-31 142.5 133 54.9
TAR375G1084 Trochodendron aralioides HOM05D007157 ORTHO05D009045 4.0e-29 134.0 185 48.1
Actinidia05886 Actinidia chinensis HOM05D007157 ORTHO05D009045 3.1e-21 107.8 119 50.4
TPR.G29386 Trifolium pratense HOM05D007157 ORTHO05D009045 2.0e-20 105.1 96 54.2
TAR375G0854 Trochodendron aralioides HOM05D007157 ORTHO05D009045 8.2e-14 83.2 95 48.4
CAN.G147.12 Capsicum annuum HOM05D004783 ORTHO05D005581 1.8e-13 82.0 373 24.4
BcaB03g14878 Brassica carinata HOM05D004783 ORTHO05D005581 6.9e-13 80.1 407 25.6
Solyc07g042030.2 Solanum lycopersicum HOM05D004783 ORTHO05D005581 3.4e-12 77.8 356 24.4
Sopen07g021630 Solanum pennellii HOM05D004783 ORTHO05D005581 1.3e-11 75.9 356 24.2
C06p45300 Brassica napus HOM05D004783 ORTHO05D005581 1.7e-11 75.5 410 25.1
PGSC0003DMG400027882 Solanum tuberosum HOM05D004783 ORTHO05D005581 1.7e-11 75.5 356 24.2
Sp5g26370 Schrenkiella parvula HOM05D004783 ORTHO05D005581 2.2e-11 75.1 404 25.2
Phvul.008G205300 Phaseolus vulgaris HOM05D004783 ORTHO05D005581 6.5e-11 73.6 411 22.9
A07p37560 Brassica napus HOM05D004783 ORTHO05D005581 1.1e-10 72.8 410 24.6
BraA07t31317Z Brassica rapa HOM05D004783 ORTHO05D005581 1.1e-10 72.8 410 24.6
Thhalv10018115m.g Eutrema salsugineum HOM05D004783 ORTHO05D005581 1.4e-10 72.4 412 25.0
AL2G30824 Arabidopsis lyrata HOM05D004783 ORTHO05D005581 5.5e-10 70.5 351 24.8
CARHR064510 Cardamine hirsuta HOM05D004783 ORTHO05D005581 2.1e-09 68.6 417 24.2
Peaxi162Scf00315g00041 Petunia axillaris HOM05D004783 ORTHO05D005581 2.1e-09 68.6 342 24.0
Lsat_1_v5_gn_4_139140 Lactuca sativa HOM05D004783 ORTHO05D005581 4.6e-09 67.4 350 22.0
arahy.Tifrunner.gnm1.ann1.LQ1LZI Arachis hypogaea HOM05D007409 ORTHO05D009264 1.8e-08 65.5 242 25.6
BolC6t39586H Brassica oleracea HOM05D004783 ORTHO05D005581 2.3e-08 65.1 312 25.0
Hma1.2p1_0057F.1_g032040 Hydrangea macrophylla HOM05D004783 ORTHO05D005581 3.9e-08 64.3 254 24.4
Aa31LG4G9300 Aethionema arabicum HOM05D004783 ORTHO05D005581 5.1e-08 63.9 333 25.8
CiPaw.13G145000 Carya illinoinensis HOM05D004783 ORTHO05D005581 1.1e-07 62.8 248 23.8
CSS0029611 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.5e-07 62.4 254 25.2
CSS0039136 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 1.5e-07 62.4 254 25.2
CDE07G1249 Ceratophyllum demersum HOM05D007128 ORTHO05D009059 1.5e-07 62.4 239 23.8
AUR62014630 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.0e-07 62.0 162 27.8
AUR62044184 Chenopodium quinoa HOM05D000891 ORTHO05D000761 2.0e-07 62.0 162 27.8
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 2.0e-07 62.0 372 22.0
Glyma.11G009000 Glycine max HOM05D007128 ORTHO05D009059 2.5e-07 61.6 240 25.4
Psat2g021520 Pisum sativum HOM05D004783 ORTHO05D005581 2.5e-07 61.6 330 26.4
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 7.4e-07 60.1 189 27.5
QL10p045743 Quercus lobata HOM05D007128 ORTHO05D009059 9.7e-07 59.7 246 23.6
VMungo0647G1136 Vigna mungo HOM05D004783 ORTHO05D005581 9.7e-07 59.7 348 23.0
MSTRG.26477 Avicennia marina HOM05D004783 ORTHO05D005581 1.3e-06 59.3 255 24.7
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.3e-06 59.3 277 22.7
CDE05G1475 Ceratophyllum demersum HOM05D000424 ORTHO05D000355 1.3e-06 59.3 195 26.2
SalBow6G2874 Salvia bowleyana HOM05D004783 ORTHO05D005581 1.7e-06 58.9 390 20.5
VMungo1309G2539 Vigna mungo HOM05D007128 ORTHO05D009059 1.7e-06 58.9 240 25.0
Gohir.D07G165100 Gossypium hirsutum HOM05D008810 ORTHO05D010971 2.2e-06 58.5 251 25.5
C01p15010 Brassica napus HOM05D000001 ORTHO05D000003 2.8e-06 58.2 257 24.9
Dinv06816 Davidia involucrata HOM05D004783 ORTHO05D005581 2.8e-06 58.2 254 24.8
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.8e-06 58.2 189 27.5
Glyma.14G039600 Glycine max HOM05D004783 ORTHO05D005581 2.8e-06 58.2 396 24.7
TPR.G11801 Trifolium pratense HOM05D004783 ORTHO05D005581 3.7e-06 57.8 272 24.6
TPR.G14625 Trifolium pratense HOM05D004783 ORTHO05D005581 3.7e-06 57.8 309 25.9
AUR62012568 Chenopodium quinoa HOM05D000891 ORTHO05D000761 4.8e-06 57.4 124 30.6
Nn2g14491 Nelumbo nucifera HOM05D004783 ORTHO05D005581 4.8e-06 57.4 375 21.6
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 4.8e-06 57.4 189 27.5
BolC1t01449H Brassica oleracea HOM05D000001 ORTHO05D000003 6.3e-06 57.0 257 24.9
Gorai.001G188700 Gossypium raimondii HOM05D008810 ORTHO05D010971 6.3e-06 57.0 251 25.1
AT1G71210 Arabidopsis thaliana HOM05D004783 ORTHO05D005581 8.2e-06 56.6 331 24.2
CSS0049259 Camellia sinensis var. sinensis HOM05D004783 ORTHO05D005581 8.2e-06 56.6 254 24.8


User provided reference genes

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