Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.4e-164 582.0 284 100.0
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 4.2e-148 528.1 284 87.0
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 3.5e-147 525.0 281 87.5
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 7.9e-147 523.9 281 88.3
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 8.2e-144 513.8 281 86.1
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.4e-143 513.1 281 86.5
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 1.8e-143 512.7 281 86.8
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.0e-142 509.2 278 86.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 5.5e-140 501.1 289 84.8
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 4.6e-139 498.0 283 83.0
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.4e-138 496.5 284 83.5
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.4e-138 496.5 283 82.3
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.3e-138 495.7 284 82.0
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 6.7e-138 494.2 284 82.4
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 4.3e-137 491.5 284 81.3
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.7e-136 489.6 284 81.3
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 2.2e-136 489.2 284 79.9
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 2.2e-136 489.2 283 82.0
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 3.7e-136 488.4 284 81.3
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.3e-136 487.6 282 80.9
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.3e-136 487.6 282 81.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.4e-135 486.5 284 80.3
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 3.1e-135 485.3 284 80.3
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 3.1e-135 485.3 276 84.1
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.1e-135 485.0 281 80.8
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 5.3e-135 484.6 284 80.6
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.6e-134 482.3 284 78.9
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 3.4e-134 481.9 283 78.8
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 7.7e-134 480.7 284 78.9
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 7.7e-134 480.7 284 80.3
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.3e-133 479.9 284 78.2
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.9e-133 478.8 284 78.9
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.8e-133 478.4 283 79.5
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 5.0e-133 478.0 284 80.6
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.1e-132 476.9 283 79.2
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.4e-132 476.5 284 78.9
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 2.5e-132 475.7 284 79.2
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 3.2e-132 475.3 283 79.2
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 4.2e-132 474.9 284 80.3
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.6e-131 473.0 284 77.5
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.6e-131 473.0 250 89.6
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 3.6e-131 471.9 284 78.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 4.7e-131 471.5 284 78.9
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 7.9e-131 470.7 281 76.9
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.8e-130 469.5 283 78.4
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.0e-129 466.1 284 78.2
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 2.0e-129 466.1 286 78.0
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.7e-128 463.0 281 76.2
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.8e-128 462.2 282 74.8
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 4.8e-128 461.5 282 74.8
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 4.8e-128 461.5 270 80.4
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 6.3e-128 461.1 281 78.3
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 2.4e-127 459.1 282 76.2
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 3.1e-127 458.8 281 75.4
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 3.1e-127 458.8 281 75.4
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 4.1e-127 458.4 281 74.7
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 9.1e-127 457.2 263 83.7
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 74.4
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 74.4
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.6e-126 455.7 284 76.8
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 2.6e-126 455.7 282 75.5
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 3.5e-126 455.3 282 75.2
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 4.5e-126 454.9 284 76.4
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 4.5e-126 454.9 282 74.1
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 5.9e-126 454.5 284 76.1
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 7.7e-126 454.1 282 74.5
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.3e-125 453.4 281 74.0
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.3e-125 453.4 282 74.1
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.2e-125 452.6 284 74.3
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 5.0e-125 451.4 314 69.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 8.5e-125 450.7 283 74.9
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.5e-124 449.9 283 76.0
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.5e-124 449.9 284 75.4
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.9e-124 449.5 281 76.2
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 3.2e-124 448.7 281 73.7
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 4.2e-124 448.4 281 73.3
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 9.4e-124 447.2 281 75.8
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 8.0e-123 444.1 284 72.2
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 8.0e-123 444.1 284 72.5
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.3e-122 442.6 283 76.0
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 6.7e-122 441.0 274 76.6
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.5e-121 439.9 289 71.3
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 2.0e-121 439.5 284 71.8
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 4.4e-121 438.3 314 68.8
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 6.3e-120 434.5 284 73.2
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.8e-119 433.0 271 76.8
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 5.3e-119 431.4 284 71.5
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.6e-118 429.9 270 75.9
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.0e-118 429.5 270 74.4
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 3.5e-118 428.7 298 70.5
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 6.5e-117 424.5 269 74.7
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.0e-114 417.2 284 70.4
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.0e-114 417.2 284 70.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.0e-114 417.2 282 68.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 7.5e-113 411.0 251 77.7
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 9.8e-113 410.6 284 71.8
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.9e-109 399.1 251 71.7
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 2.9e-109 399.1 251 71.3
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.9e-108 396.4 277 66.4
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 9.4e-108 394.0 277 65.7
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 3.0e-106 389.0 260 67.7
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.2e-105 387.1 236 78.4
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 7.5e-105 384.4 266 68.8
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.0e-98 364.0 248 67.3
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.7e-96 356.7 425 47.1
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.1e-95 354.0 190 85.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.5e-92 342.8 287 57.5
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 3.3e-92 342.4 283 54.8
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 9.8e-89 330.9 418 45.5
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.9e-87 326.6 266 61.3
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.3e-85 319.7 282 55.0
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 7.3e-84 314.7 267 57.3
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.1e-78 296.6 167 79.0
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.3e-77 293.9 167 78.4
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 3.9e-77 292.4 176 75.0
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.1e-76 290.8 280 49.3
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 6.8e-74 281.6 180 67.8
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.0e-73 280.0 144 84.7
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 4.9e-72 275.4 309 47.6
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.1e-66 257.7 295 45.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 4.9e-64 248.8 156 74.4
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.1e-60 237.7 249 50.2
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 3.6e-59 232.6 295 43.1
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-56 223.8 135 79.3
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.2e-56 223.4 143 76.9
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.5e-54 216.1 144 63.2
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.7e-53 213.8 250 47.6
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 1.9e-47 193.7 156 62.8
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 4.8e-43 179.1 223 40.8
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.7e-32 144.1 110 60.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 7.2e-31 138.7 77 80.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 2.3e-29 133.7 71 83.1
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 4.8e-27 125.9 72 73.6
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 4.8e-27 125.9 72 73.6
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 4.2e-23 112.8 92 60.9
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-22 111.3 75 70.7
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-22 111.3 76 69.7
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.1e-22 110.5 80 65.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.7e-22 110.2 80 62.5
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.2e-15 86.7 91 51.6
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.2e-14 84.7 55 76.4
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 3.6e-14 83.2 85 52.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.7e-08 64.3 170 28.2
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 5.5e-07 59.3 50 62.0
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.6e-06 57.8 126 29.4
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-06 57.4 87 42.5


User provided reference genes

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