Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 2.1e-97 359.0 177 100.0
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 2.1e-97 359.0 177 100.0
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 5.2e-72 274.6 174 79.3
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.5e-71 273.1 173 82.1
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 6.4e-70 267.7 174 78.2
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 8.3e-70 267.3 175 79.4
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 7.8e-68 260.8 171 77.8
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 1.3e-67 260.0 173 76.3
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 1.5e-66 256.5 172 74.4
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 4.3e-66 255.0 172 73.8
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.6e-65 253.1 179 75.4
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 1.6e-65 253.1 179 76.5
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 3.6e-65 251.9 158 76.6
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 2.0e-63 246.1 179 75.4
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 2.6e-63 245.7 164 74.4
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 1.7e-62 243.0 164 72.0
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 2.2e-62 242.7 167 71.9
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 2.2e-62 242.7 171 72.5
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 4.1e-61 238.4 169 69.2
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 5.4e-61 238.0 143 81.1
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 5.4e-61 238.0 166 71.7
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.2e-60 236.9 173 70.5
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 1.7e-59 233.0 161 69.6
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 8.6e-59 230.7 149 74.5
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 2.5e-58 229.2 143 79.7
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 2.5e-58 229.2 179 64.2
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 2.5e-58 229.2 165 69.7
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 4.3e-58 228.4 177 66.7
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 1.6e-57 226.5 139 77.0
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 4.7e-57 224.9 161 70.8
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 6.2e-57 224.6 171 67.8
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 1.1e-56 223.8 158 69.6
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 2.3e-56 222.6 167 68.9
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 2.3e-56 222.6 175 66.9
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 3.1e-56 222.2 155 69.7
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 4.0e-56 221.9 187 63.1
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 6.8e-56 221.1 180 67.2
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 9.9e-55 217.2 178 61.8
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 2.2e-54 216.1 126 81.7
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 6.4e-54 214.5 155 69.7
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.4e-53 213.4 141 75.2
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 1.4e-53 213.4 214 55.1
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.9e-53 213.0 171 66.1
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 2.4e-53 212.6 139 72.7
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 7.1e-53 211.1 162 64.2
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 4.6e-52 208.4 136 75.0
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 6.0e-52 208.0 145 70.3
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 1.0e-51 207.2 156 68.6
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 2.3e-51 206.1 157 63.7
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 3.0e-51 205.7 145 70.3
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 3.0e-51 205.7 145 70.3
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 3.0e-51 205.7 145 70.3
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 3.0e-51 205.7 145 70.3
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 3.0e-51 205.7 145 70.3
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.0e-51 205.7 171 64.3
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 8.6e-51 204.1 167 62.3
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 1.5e-50 203.4 127 76.4
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 1.9e-50 203.0 156 65.4
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 2.5e-50 202.6 133 75.9
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 9.6e-50 200.7 145 69.0
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 1.6e-49 199.9 132 75.8
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 2.1e-49 199.5 137 70.1
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 2.1e-49 199.5 137 70.1
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 3.6e-49 198.7 166 62.0
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 4.7e-49 198.4 167 61.1
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 8.1e-49 197.6 155 63.9
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 4.0e-48 195.3 125 75.2
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 8.9e-48 194.1 133 69.9
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 2.0e-47 193.0 126 73.8
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 2.6e-47 192.6 147 63.9
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 3.4e-47 192.2 159 60.4
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 4.4e-47 191.8 140 65.0
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 5.8e-47 191.4 151 66.9
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 5.8e-47 191.4 140 65.7
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 3.8e-46 188.7 126 72.2
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 6.4e-46 188.0 174 59.2
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 1.2e-44 183.7 120 72.5
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 2.7e-44 182.6 120 74.2
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 3.5e-44 182.2 151 62.9
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 3.0e-43 179.1 133 68.4
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 9.6e-42 174.1 125 68.8
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 2.1e-41 172.9 125 65.6
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 4.0e-40 168.7 114 72.8
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 2.6e-39 166.0 157 55.4
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 1.7e-38 163.3 121 60.3
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 3.8e-38 162.2 127 70.1
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 2.4e-37 159.5 140 59.3
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 9.3e-37 157.5 92 82.6
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 4.6e-36 155.2 121 69.4
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 4.8e-33 145.2 126 62.7
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 8.1e-33 144.4 132 59.8
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 2.6e-31 139.4 101 66.3
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 1.2e-28 130.6 168 45.8
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 3.9e-27 125.6 100 62.0
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 1.5e-23 113.6 171 43.9
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 3.4e-23 112.5 89 64.0
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 1.9e-21 106.7 89 60.7
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 9.6e-18 94.4 125 40.8
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 9.0e-16 87.8 50 82.0
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 1.3e-14 84.0 59 64.4
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 1.9e-13 80.1 69 58.0
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 5.5e-13 78.6 44 81.8
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 1.6e-12 77.0 122 40.2
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 2.1e-12 76.6 122 36.1
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 1.0e-11 74.3 48 70.8
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 8.7e-11 71.2 39 79.5
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 9.7e-10 67.8 166 31.3
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 3.7e-09 65.9 119 31.1


User provided reference genes

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