Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 5.4e-119 431.0 219 100.0
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.7e-117 426.0 219 99.1
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.1e-98 363.6 219 82.6
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 2.3e-98 362.5 220 84.5
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.2e-97 360.1 220 82.3
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 3.4e-97 358.6 215 83.7
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 7.6e-97 357.5 220 81.4
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 6.4e-96 354.4 219 79.5
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.9e-95 352.8 219 79.5
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 2.4e-95 352.4 219 79.0
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 1.7e-93 346.3 220 77.3
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 3.9e-93 345.1 225 77.8
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.9e-92 342.8 217 81.1
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 3.3e-92 342.0 225 76.0
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.3e-92 340.9 223 76.2
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.8e-91 339.0 219 75.8
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.0e-90 335.1 223 74.9
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.2e-90 334.7 217 76.0
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 8.9e-90 334.0 223 74.9
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 2.0e-89 332.8 219 73.5
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 3.4e-89 332.0 217 76.0
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.9e-88 328.9 226 74.3
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 3.8e-88 328.6 221 74.7
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 3.8e-88 328.6 218 71.6
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.9e-88 328.2 218 72.0
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 4.9e-88 328.2 220 73.2
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 6.4e-88 327.8 217 72.4
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.4e-87 326.6 217 71.9
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.9e-87 326.2 217 71.4
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.4e-87 325.9 217 71.9
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 5.4e-87 324.7 219 73.1
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.1e-87 324.3 226 71.7
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.1e-86 322.8 219 71.7
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.1e-86 322.8 216 71.8
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 3.5e-86 322.0 219 72.1
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 6.0e-86 321.2 220 70.0
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 7.8e-86 320.9 217 71.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 7.8e-86 320.9 219 71.7
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.3e-85 320.1 221 71.5
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.3e-85 320.1 217 70.5
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 1.3e-85 320.1 221 71.0
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.7e-85 319.7 216 70.8
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.3e-85 319.3 220 70.9
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 3.0e-85 318.9 220 70.0
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.9e-85 318.5 220 70.5
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 6.6e-85 317.8 216 70.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 6.6e-85 317.8 219 71.7
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 8.7e-85 317.4 215 72.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 8.7e-85 317.4 248 65.3
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 8.7e-85 317.4 226 70.4
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 8.7e-85 317.4 217 71.9
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 8.7e-85 317.4 219 71.2
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 8.7e-85 317.4 216 70.4
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.1e-84 317.0 217 70.0
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.9e-84 316.2 206 74.8
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.5e-84 315.8 223 68.6
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 9.6e-84 313.9 222 68.9
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 2.1e-83 312.8 222 68.5
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 3.6e-83 312.0 226 66.8
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.6e-83 312.0 229 68.6
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 3.6e-83 312.0 213 71.8
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.6e-83 312.0 219 70.3
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 4.8e-83 311.6 228 66.7
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 6.2e-83 311.2 218 69.3
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 8.1e-83 310.8 222 68.9
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.4e-82 310.1 218 69.3
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.8e-82 309.7 218 68.3
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 2.4e-82 309.3 235 63.8
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.1e-82 308.9 219 68.5
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 5.3e-82 308.1 227 67.0
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 9.0e-82 307.4 220 69.1
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.2e-81 307.0 217 69.1
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.2e-81 307.0 217 67.7
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 1.5e-81 306.6 217 67.7
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.6e-81 305.8 221 66.1
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 2.6e-81 305.8 221 66.5
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 4.5e-81 305.1 262 59.9
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.3e-80 303.5 220 67.3
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.3e-80 303.5 227 63.4
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 3.8e-80 302.0 221 66.1
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 4.9e-80 301.6 217 66.4
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 4.9e-80 301.6 221 65.2
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 6.4e-80 301.2 217 70.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 8.4e-80 300.8 221 64.3
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.1e-79 300.4 211 72.5
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.9e-79 299.7 219 66.2
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.9e-79 299.7 219 66.2
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.4e-79 299.3 220 67.7
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.6e-78 296.6 231 63.6
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.6e-78 296.6 220 67.3
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 3.5e-78 295.4 221 64.7
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 3.5e-78 295.4 221 64.7
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.0e-77 293.9 222 71.2
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 6.6e-77 291.2 219 67.1
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.9e-76 289.7 218 64.2
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 9.6e-76 287.3 260 60.8
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.1e-75 286.2 217 63.6
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 2.1e-75 286.2 221 66.1
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.6e-75 285.4 225 64.4
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 6.2e-75 284.6 192 70.8
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.1e-74 283.9 219 63.5
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.8e-74 283.1 245 60.4
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.8e-74 283.1 217 60.4
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 2.0e-73 279.6 252 58.3
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.4e-73 278.9 213 66.2
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 3.4e-73 278.9 221 62.0
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 2.9e-72 275.8 227 60.8
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 6.4e-72 274.6 211 66.4
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 6.4e-72 274.6 217 62.2
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 5.5e-71 271.6 190 70.0
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 5.1e-69 265.0 181 69.1
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.3e-68 261.9 161 74.5
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 5.3e-66 255.0 185 65.9
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.0e-64 250.8 220 61.4
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 4.8e-59 231.9 191 62.3
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.2e-57 227.3 132 76.5
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.2e-57 227.3 220 54.1
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 3.4e-57 225.7 232 49.6
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 5.5e-55 218.4 123 80.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 7.9e-54 214.5 225 55.1
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.6e-51 206.8 115 82.6
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.4e-50 203.8 248 45.6
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 5.9e-49 198.4 250 44.4
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 8.5e-48 194.5 207 49.8
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.2e-38 164.1 172 50.6
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 6.1e-38 161.8 251 37.5
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.7e-37 158.3 100 71.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 4.5e-33 145.6 182 45.6
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.7e-27 125.9 251 36.3
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.1e-14 83.6 43 88.4
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 2.3e-13 80.1 85 52.9
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 7.0e-10 68.6 37 83.8
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.0e-09 67.0 38 76.3
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 2.9e-08 63.2 213 28.2
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.1e-07 61.2 43 58.1
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 7.3e-07 58.5 41 75.6


User provided reference genes

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