Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LMC2LS Arachis hypogaea HOM05D003910 ORTHO05D004622 2.6e-223 778.5 416 100.0
arahy.Tifrunner.gnm1.ann1.YMC104 Arachis hypogaea HOM05D003910 ORTHO05D004622 9.9e-223 776.5 416 99.8
Lalb_Chr11g0066041 Lupinus albus HOM05D003910 ORTHO05D004622 2.6e-178 629.0 440 80.7
Lalb_Chr08g0241321 Lupinus albus HOM05D003910 ORTHO05D004622 4.5e-175 618.2 440 78.9
Gohir.D05G237801 Gossypium hirsutum HOM05D003910 ORTHO05D004622 9.4e-173 610.5 441 75.1
Gorai.009G246200 Gossypium raimondii HOM05D003910 ORTHO05D004622 9.4e-173 610.5 441 75.1
Thecc.08G127500 Theobroma cacao HOM05D003910 ORTHO05D004622 2.1e-172 609.4 441 75.5
Cfa018581 Carpinus fangiana HOM05D003910 ORTHO05D004622 4.7e-172 608.2 440 73.2
COL.COLO4_24698 Corchorus olitorius HOM05D003910 ORTHO05D004622 4.7e-172 608.2 441 76.0
Haze_17499 Corylus avellana HOM05D003910 ORTHO05D004622 6.1e-172 607.8 440 73.2
Cpa.g.sc64.96 Carica papaya HOM05D003910 ORTHO05D004622 2.3e-171 605.9 440 74.1
CANSAT25G1111 Cannabis sativa HOM05D003910 ORTHO05D004622 1.1e-170 603.6 440 73.4
Gohir.A05G235500 Gossypium hirsutum HOM05D003910 ORTHO05D004622 1.1e-170 603.6 441 74.1
QL09p034136 Quercus lobata HOM05D003910 ORTHO05D004622 2.0e-170 602.8 439 77.2
THA.LOC104813147 Tarenaya hassleriana HOM05D003910 ORTHO05D004622 2.6e-170 602.4 442 73.8
MD15G1346700 Malus domestica HOM05D003910 ORTHO05D004622 5.7e-170 601.3 440 74.3
Prupe.1G494300 Prunus persica HOM05D003910 ORTHO05D004622 5.7e-170 601.3 440 75.0
PGR044G2730 Punica granatum HOM05D003910 ORTHO05D004622 1.7e-169 599.7 439 73.6
Potri.002G082300 Populus trichocarpa HOM05D003910 ORTHO05D004622 2.8e-169 599.0 440 76.4
Atru.chr13.1495 Acer truncatum HOM05D003910 ORTHO05D004622 3.7e-169 598.6 459 73.2
MD08G1161600 Malus domestica HOM05D003910 ORTHO05D004622 8.2e-169 597.4 418 77.0
Duzib041G0414 Durio zibethinus HOM05D003910 ORTHO05D004622 1.1e-168 597.0 440 74.3
Manes.02G164600 Manihot esculenta HOM05D003910 ORTHO05D004622 1.8e-168 596.3 440 76.1
Lj1g0017187 Lotus japonicus HOM05D003910 ORTHO05D004622 2.4e-168 595.9 440 77.3
CiPaw.16G066200 Carya illinoinensis HOM05D003910 ORTHO05D004622 7.0e-168 594.3 440 71.8
Sabra02G0064500 Salix brachista HOM05D003910 ORTHO05D004622 9.1e-168 594.0 441 76.0
Manes.18G078475 Manihot esculenta HOM05D003910 ORTHO05D004622 2.7e-167 592.4 441 76.6
Medtr3g088610 Medicago truncatula HOM05D003910 ORTHO05D004622 4.5e-167 591.7 430 75.8
Sabra05G0135000 Salix brachista HOM05D003910 ORTHO05D004622 4.5e-167 591.7 441 71.4
Carub.0002s1641 Capsella rubella HOM05D003910 ORTHO05D004622 5.9e-167 591.3 435 74.7
Sp5g24850 Schrenkiella parvula HOM05D003910 ORTHO05D004622 5.9e-167 591.3 437 73.2
TAR629G0788 Trochodendron aralioides HOM05D003910 ORTHO05D004622 7.7e-167 590.9 422 78.0
CARHR062800 Cardamine hirsuta HOM05D003910 ORTHO05D004622 1.0e-166 590.5 435 74.0
Eucgr.F03796 Eucalyptus grandis HOM05D003910 ORTHO05D004622 1.3e-166 590.1 433 77.1
Solyc08g069030.4 Solanum lycopersicum HOM05D003910 ORTHO05D004622 1.3e-166 590.1 395 77.0
Sopen08g022680 Solanum pennellii HOM05D003910 ORTHO05D004622 1.3e-166 590.1 395 79.0
AL2G28910 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.7e-166 589.7 435 73.1
Thhalv10018595m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.2e-166 589.3 445 73.5
FAN15G2864 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.8e-166 588.6 440 72.3
HanXRQChr17g0559761 Helianthus annuus HOM05D003910 ORTHO05D004622 1.5e-165 586.6 444 71.8
Lj7A342T56 Lonicera japonica HOM05D003910 ORTHO05D004622 1.5e-165 586.6 372 81.7
PGSC0003DMG400029545 Solanum tuberosum HOM05D003910 ORTHO05D004622 1.5e-165 586.6 390 76.9
CSS0022256 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 2.5e-165 585.9 454 68.7
Cc08_g06800 Coffea canephora HOM05D003910 ORTHO05D004622 2.5e-165 585.9 414 77.1
AT1G69740 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 3.2e-165 585.5 435 72.6
Glyma.04G247700 Glycine max HOM05D003910 ORTHO05D004622 3.2e-165 585.5 443 76.3
Rhsim05G0148200 Rhododendron simsii HOM05D003910 ORTHO05D004622 3.2e-165 585.5 386 79.8
VMungo1309G0189 Vigna mungo HOM05D003910 ORTHO05D004622 3.2e-165 585.5 441 77.1
Phvul.009G127100 Phaseolus vulgaris HOM05D003910 ORTHO05D004622 9.4e-165 583.9 431 76.3
CAN.G908.4 Capsicum annuum HOM05D003910 ORTHO05D004622 1.6e-164 583.2 385 77.4
Nitab4.5_0000502g0120 Nicotiana tabacum HOM05D003910 ORTHO05D004622 2.1e-164 582.8 388 79.1
ECA233G1142 Erigeron canadensis HOM05D003910 ORTHO05D004622 2.7e-164 582.4 370 81.6
MELO3C008086.2 Cucumis melo HOM05D003910 ORTHO05D004622 3.6e-164 582.0 440 74.8
FAN20G2211 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.6e-164 582.0 431 77.0
FAN27G3176 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.6e-164 582.0 431 76.8
Dinv27301 Davidia involucrata HOM05D003910 ORTHO05D004622 4.7e-164 581.6 387 76.7
Nitab4.5_0005516g0010 Nicotiana tabacum HOM05D003910 ORTHO05D004622 8.0e-164 580.9 390 78.5
TWI32G0928 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 8.0e-164 580.9 449 74.6
ClCG11G008960 Citrullus lanatus HOM05D003910 ORTHO05D004622 1.0e-163 580.5 438 75.6
RcHm_v2.0_Chr6g0296081 Rosa chinensis HOM05D003910 ORTHO05D004622 1.0e-163 580.5 431 77.0
DCAR_016682 Daucus carota HOM05D003910 ORTHO05D004622 1.4e-163 580.1 392 77.8
TWI60G1334 Tripterygium wilfordii HOM05D003910 ORTHO05D004622 1.8e-163 579.7 425 77.6
Nn4g23592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.3e-163 579.3 417 73.9
Ciclev10001195m.g Citrus clementina HOM05D003910 ORTHO05D004622 3.0e-163 578.9 424 76.9
FvH4_2g27170 Fragaria vesca HOM05D003910 ORTHO05D004622 3.0e-163 578.9 429 76.7
FAN24G0257 Fragaria x ananassa HOM05D003910 ORTHO05D004622 3.0e-163 578.9 429 76.7
Aa31LG11G8660 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.0e-163 578.6 397 75.3
BolC6t39425H Brassica oleracea HOM05D003910 ORTHO05D004622 4.0e-163 578.6 436 71.8
MSTRG.25378 Avicennia marina HOM05D003910 ORTHO05D004622 5.2e-163 578.2 449 69.5
C06p43500 Brassica napus HOM05D003910 ORTHO05D004622 5.2e-163 578.2 436 71.8
PSO384G4520 Papaver somniferum HOM05D003910 ORTHO05D004622 5.2e-163 578.2 387 79.1
GSVIVG01008851001 Vitis vinifera HOM05D003910 ORTHO05D004622 5.2e-163 578.2 440 75.2
BcaB03g14749 Brassica carinata HOM05D003910 ORTHO05D004622 6.8e-163 577.8 436 72.2
PSO339G3693 Papaver somniferum HOM05D003910 ORTHO05D004622 8.8e-163 577.4 387 79.1
Sed0003239 Sechium edule HOM05D003910 ORTHO05D004622 8.8e-163 577.4 415 78.1
BraA07t31189Z Brassica rapa HOM05D003910 ORTHO05D004622 1.2e-162 577.0 436 72.9
BcaC08g46419 Brassica carinata HOM05D003910 ORTHO05D004622 1.5e-162 576.6 436 71.6
Lsat_1_v5_gn_8_141520 Lactuca sativa HOM05D003910 ORTHO05D004622 3.4e-162 575.5 435 70.8
TPR.G16047 Trifolium pratense HOM05D003910 ORTHO05D004622 5.7e-162 574.7 429 76.9
CsaV3_2G033150 Cucumis sativus L. HOM05D003910 ORTHO05D004622 7.5e-162 574.3 440 74.3
Dinv07208 Davidia involucrata HOM05D003910 ORTHO05D004622 7.5e-162 574.3 440 70.7
Ca_16573_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 1.3e-161 573.5 433 76.0
Ca_29570_v3 Cicer arietinum L. HOM05D003910 ORTHO05D004622 1.7e-161 573.2 432 75.9
A07p36130 Brassica napus HOM05D003910 ORTHO05D004622 2.2e-161 572.8 438 72.1
AUR62019066 Chenopodium quinoa HOM05D003910 ORTHO05D004622 4.8e-161 571.6 369 82.1
Migut.C01121 Erythranthe guttata HOM05D003910 ORTHO05D004622 4.8e-161 571.6 449 71.0
AUR62014326 Chenopodium quinoa HOM05D003910 ORTHO05D004622 8.3e-161 570.9 369 81.6
SGA_v2.0_scaffold52G18960 Striga asiatica HOM05D003910 ORTHO05D004622 4.1e-160 568.5 446 67.7
Psat5g087720 Pisum sativum HOM05D003910 ORTHO05D004622 1.2e-159 567.0 326 87.4
Oeu028562.1 Olea europaea HOM05D003910 ORTHO05D004622 2.7e-159 565.8 415 73.3
SalBow7G1186 Salvia bowleyana HOM05D003910 ORTHO05D004622 1.7e-158 563.1 447 69.8
Ah.15g093760 Amaranthus hybridus HOM05D003910 ORTHO05D004622 9.5e-157 557.4 388 75.3
Duzib116G0657 Durio zibethinus HOM05D003910 ORTHO05D004622 9.5e-157 557.4 437 70.7
EL10Ac1g01030 Beta vulgaris HOM05D003910 ORTHO05D004622 1.6e-156 556.6 425 73.4
CDE10G0179 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 9.8e-154 547.4 367 74.9
Hma1.2p1_0129F.1_g060300 Hydrangea macrophylla HOM05D003910 ORTHO05D004622 1.3e-153 547.0 402 75.9
Aqoxy3G03785 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 4.5e-151 538.5 430 71.2
unitig_46.g18101 Utricularia gibba HOM05D003910 ORTHO05D004622 2.3e-150 536.2 325 82.8
ATR0691G248 Amborella trichopoda HOM05D003910 ORTHO05D004622 3.6e-148 528.9 364 75.3
Os06g0704600 Oryza sativa ssp. japonica HOM05D003910 ORTHO05D004622 6.1e-148 528.1 363 75.5
Zm00001eb227310 Zea mays HOM05D003910 ORTHO05D004622 6.1e-148 528.1 363 74.9
AagrBONN_evm.TU.Sc2ySwM_117.3949 Anthoceros agrestis HOM05D003910 ORTHO05D004622 8.0e-148 527.7 415 68.4
MBI14_g21210_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.4e-144 516.2 315 81.0
Peaxi162Scf00288g00822 Petunia axillaris HOM05D003910 ORTHO05D004622 3.2e-144 515.8 395 72.2
SMO147G0120 Selaginella moellendorffii HOM05D003910 ORTHO05D004622 3.5e-143 512.3 360 71.4
HPP92_019462 Vanilla planifolia HOM05D003910 ORTHO05D004622 7.8e-143 511.1 374 71.9
MBI14_g37526_MAGBIO Magnolia biondii HOM05D003910 ORTHO05D004622 2.1e-140 503.1 440 66.1
Pp3c4_13690 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.0e-139 500.7 360 70.8
Mapoly0065s0095 Marchantia polymorpha HOM05D003910 ORTHO05D004622 1.4e-139 500.4 360 70.8
Pp3c12_10600 Physcomitrium patens HOM05D003910 ORTHO05D004622 1.8e-139 500.0 360 70.6
SHI34070 Sapria himalayana HOM05D003910 ORTHO05D004622 4.0e-139 498.8 387 66.7
Oeu059440.1 Olea europaea HOM05D003910 ORTHO05D004622 2.0e-138 496.5 388 72.2
Aqoxy6G02874 Aquilegia oxysepala HOM05D003910 ORTHO05D004622 3.4e-138 495.7 417 64.0
Sc16g0000040 Simmondsia chinensis HOM05D003910 ORTHO05D004622 8.6e-134 481.1 348 78.4
CDE10G1335 Ceratophyllum demersum HOM05D003910 ORTHO05D004622 1.1e-131 474.2 286 80.8
Glyma.06G115000 Glycine max HOM05D003910 ORTHO05D004622 9.2e-128 461.1 349 71.1
PSO063G2338 Papaver somniferum HOM05D003910 ORTHO05D004622 5.6e-125 451.8 283 80.2
Carub.0001s3515 Capsella rubella HOM05D003910 ORTHO05D004622 4.7e-124 448.7 326 69.6
Actinidia29473 Actinidia chinensis HOM05D003910 ORTHO05D004622 8.9e-123 444.5 372 68.5
SEGI_23261 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 8.9e-123 444.5 365 65.2
Thhalv10012213m.g Eutrema salsugineum HOM05D003910 ORTHO05D004622 2.0e-122 443.4 326 69.3
Sp1g33510 Schrenkiella parvula HOM05D003910 ORTHO05D004622 2.0e-122 443.4 326 69.0
CARHR035900 Cardamine hirsuta HOM05D003910 ORTHO05D004622 3.4e-122 442.6 324 69.1
BcaB07g33952 Brassica carinata HOM05D003910 ORTHO05D004622 4.4e-122 442.2 326 68.4
AT1G44318 Arabidopsis thaliana HOM05D003910 ORTHO05D004622 8.4e-121 438.0 326 69.0
AL1G52270 Arabidopsis lyrata HOM05D003910 ORTHO05D004622 1.9e-120 436.8 326 68.7
BcaC08g42844 Brassica carinata HOM05D003910 ORTHO05D004622 1.6e-119 433.7 324 68.2
C06p00600 Brassica napus HOM05D003910 ORTHO05D004622 1.6e-119 433.7 324 68.2
BolC6t35193H Brassica oleracea HOM05D003910 ORTHO05D004622 1.6e-119 433.7 324 68.2
TPR.G35178 Trifolium pratense HOM05D003910 ORTHO05D004622 4.6e-119 432.2 467 59.3
BraSC36t46049Z Brassica rapa HOM05D003910 ORTHO05D004622 1.7e-118 430.3 326 67.5
A10p07550 Brassica napus HOM05D003910 ORTHO05D004622 6.6e-118 428.3 326 67.2
PSO782G2793 Papaver somniferum HOM05D003910 ORTHO05D004622 1.9e-117 426.8 279 79.2
SGA_v2.0_scaffold24G10456 Striga asiatica HOM05D003910 ORTHO05D004622 2.4e-107 393.3 309 67.6
Atru.chr12.1381 Acer truncatum HOM05D003910 ORTHO05D004622 5.8e-106 388.7 211 89.6
MCO01G126 Micromonas commoda HOM05D003910 ORTHO05D004622 3.2e-104 382.9 327 59.3
CSS0027293 Camellia sinensis var. sinensis HOM05D003910 ORTHO05D004622 7.1e-104 381.7 341 62.8
Aa31LG6G9390 Aethionema arabicum HOM05D003910 ORTHO05D004622 6.2e-100 368.6 282 67.7
Cre02.g091050 Chlamydomonas reinhardtii HOM05D003910 ORTHO05D004622 4.0e-99 365.9 332 56.0
PRCOL_00003407 Prasinoderma coloniale HOM05D003910 ORTHO05D004622 2.9e-97 359.8 312 59.6
Psat4g053280 Pisum sativum HOM05D003910 ORTHO05D004622 3.8e-89 332.8 228 79.4
Actinidia03462 Actinidia chinensis HOM05D003910 ORTHO05D004622 1.0e-73 281.6 191 73.8
arahy.Tifrunner.gnm1.ann1.875P1G Arachis hypogaea HOM05D003910 ORTHO05D004622 6.1e-71 272.3 189 74.6
arahy.Tifrunner.gnm1.ann1.YZW1CW Arachis hypogaea HOM05D003910 ORTHO05D004622 4.8e-68 262.7 189 72.5
Aa31sc95G130 Aethionema arabicum HOM05D003910 ORTHO05D004622 1.1e-64 251.5 211 64.0
arahy.Tifrunner.gnm1.ann1.I497ZX Arachis hypogaea HOM05D003910 ORTHO05D004622 1.3e-60 238.0 185 67.0
arahy.Tifrunner.gnm1.ann1.FDSF2K Arachis hypogaea HOM05D003910 ORTHO05D004622 5.3e-59 232.6 178 75.8
arahy.Tifrunner.gnm1.ann1.MAXD3F Arachis hypogaea HOM05D003910 ORTHO05D004622 4.5e-58 229.6 196 63.8
Nn3g17592 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.1e-55 220.7 288 46.2
Psat0s476g0040 Pisum sativum HOM05D003910 ORTHO05D004622 4.7e-55 219.5 123 82.1
arahy.Tifrunner.gnm1.ann1.KLV74S Arachis hypogaea HOM05D003910 ORTHO05D004622 1.2e-53 214.9 185 63.8
Haze_27031 Corylus avellana HOM05D003910 ORTHO05D004622 1.6e-50 204.5 247 46.6
CBR_g49534 Chara braunii HOM05D003910 ORTHO05D000048 2.2e-49 200.7 201 54.7
Aa31sc107G70 Aethionema arabicum HOM05D003910 ORTHO05D004622 4.7e-47 193.0 148 68.9
BcaB06g27098 Brassica carinata HOM05D003910 ORTHO05D004622 9.8e-45 185.3 101 83.2
Psat4g053240 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-43 180.6 104 84.6
BcaB05g22163 Brassica carinata HOM05D003910 ORTHO05D004622 9.1e-43 178.7 101 80.2
BcaB04g19319 Brassica carinata HOM05D003910 ORTHO05D004622 8.0e-39 165.6 100 77.0
Cfa022049 Carpinus fangiana HOM05D003910 ORTHO05D004622 1.0e-38 165.2 311 34.4
TPR.G20499 Trifolium pratense HOM05D003910 ORTHO05D004622 5.4e-35 152.9 122 67.2
Oeu059446.1 Olea europaea HOM05D003910 ORTHO05D004622 2.7e-34 150.6 77 84.4
SpUn0247_0040 Schrenkiella parvula HOM05D003910 ORTHO05D004622 8.6e-33 145.6 76 84.2
arahy.Tifrunner.gnm1.ann1.ZWJ939 Arachis hypogaea HOM05D000074 ORTHO05D004622 3.0e-30 137.1 188 46.8
Nn4g23594 Nelumbo nucifera HOM05D003910 ORTHO05D004622 2.0e-26 124.4 100 68.0
Haze_27000 Corylus avellana HOM05D003910 ORTHO05D004622 1.5e-24 118.2 212 34.0
Lsat_1_v5_gn_8_139480 Lactuca sativa HOM05D003910 ORTHO05D004420 2.2e-20 104.4 106 53.8
TAR622G0657 Trochodendron aralioides HOM05D003910 ORTHO05D004622 1.0e-17 95.5 135 44.4
arahy.Tifrunner.gnm1.ann1.LHV34C Arachis hypogaea HOM05D003910 ORTHO05D004622 5.2e-14 83.2 88 54.5
SEGI_40510 Sequoiadendron giganteum HOM05D003910 ORTHO05D004622 9.9e-13 79.0 53 69.8
Psat1g078960 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-11 74.3 117 46.2
Psat1g079000 Pisum sativum HOM05D003910 ORTHO05D004622 2.4e-11 74.3 117 46.2
Actinidia03463 Actinidia chinensis HOM05D003910 ORTHO05D004622 7.8e-10 69.3 72 56.9
Nn3g17591 Nelumbo nucifera HOM05D003910 ORTHO05D004622 1.0e-09 68.9 36 91.7
Lsat_1_v5_gn_8_143861 Lactuca sativa HOM05D003910 ORTHO05D004622 1.5e-08 65.1 59 59.3
TAR371G0308 Trochodendron aralioides HOM05D003910 ORTHO05D004622 4.7e-07 60.1 74 50.0


User provided reference genes

Program Settings