Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 7.1e-37 156.8 79 100.0
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 3.9e-19 97.8 65 75.4
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.9e-19 97.8 65 75.4
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.5e-18 95.9 61 80.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.9e-18 95.5 61 83.6
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 1.9e-18 95.5 61 78.7
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 9.6e-18 93.2 61 77.0
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.3e-17 92.8 61 78.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.3e-17 92.8 61 78.7
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.3e-17 92.8 65 72.3
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.3e-17 92.8 61 82.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.6e-17 92.4 65 72.3
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.1e-17 92.0 60 80.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 2.1e-17 92.0 65 72.3
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.8e-17 91.7 65 70.8
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 2.8e-17 91.7 60 78.3
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 3.6e-17 91.3 61 75.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 4.8e-17 90.9 61 82.0
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.2e-17 90.5 60 80.0
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.8e-16 89.0 61 77.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.8e-16 89.0 61 78.7
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.4e-16 88.6 65 69.2
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 3.1e-16 88.2 59 76.3
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 6.9e-16 87.0 61 80.3
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 9.0e-16 86.7 59 76.3
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 9.0e-16 86.7 61 72.1
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.2e-15 86.3 60 73.3
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 2.0e-15 85.5 65 67.7
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-15 85.5 65 67.7
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-15 85.5 65 67.7
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.0e-15 85.5 61 73.8
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.6e-15 85.1 60 75.0
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 4.5e-15 84.3 61 72.1
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 5.8e-15 84.0 65 66.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 9.9e-15 83.2 60 70.0
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 9.9e-15 83.2 60 70.0
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.3e-14 82.8 65 63.1
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.7e-14 82.4 60 70.0
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.9e-14 81.6 61 68.9
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.9e-14 81.6 61 68.9
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 3.8e-14 81.3 65 64.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 3.8e-14 81.3 65 66.2
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.8e-14 81.3 60 71.7
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.9e-14 80.9 60 68.3
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 6.4e-14 80.5 65 64.6
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.4e-14 80.1 65 66.2
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 8.4e-14 80.1 60 66.7
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 1.1e-13 79.7 60 70.0
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.4e-13 79.3 60 66.7
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.9e-13 79.0 65 64.6
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.9e-13 79.0 60 68.3
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.9e-13 79.0 65 63.1
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 2.4e-13 78.6 61 68.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 3.2e-13 78.2 61 65.6
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 3.2e-13 78.2 65 60.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 3.2e-13 78.2 65 63.1
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.4e-13 77.4 65 63.1
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.1e-13 77.0 61 70.5
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.1e-13 77.0 61 70.5
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 9.3e-13 76.6 61 65.6
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.2e-12 76.3 61 67.2
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-12 76.3 65 63.1
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.2e-12 76.3 65 63.1
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.2e-12 76.3 52 76.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.6e-12 75.9 60 68.3
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.6e-12 75.9 65 58.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.6e-12 75.9 61 67.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.1e-12 75.5 45 82.2
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.1e-12 75.5 60 61.7
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 2.1e-12 75.5 65 61.5
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.1e-12 75.5 60 66.7
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 6.0e-12 73.9 60 65.0
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 6.0e-12 73.9 61 65.6
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 6.0e-12 73.9 65 58.5
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 7.9e-12 73.6 60 65.0
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.8e-11 72.4 60 60.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.3e-11 72.0 61 65.6
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.9e-11 71.2 60 65.0
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 5.1e-11 70.9 60 60.0
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 5.1e-11 70.9 60 60.0
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 8.7e-11 70.1 60 65.0
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 8.7e-11 70.1 52 71.2
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 8.7e-11 70.1 60 63.3
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.1e-10 69.7 60 63.3
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.5e-10 69.3 60 56.7
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.5e-10 69.3 60 65.0
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.5e-10 69.3 52 73.1
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.5e-10 69.3 60 63.3
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.9e-10 68.9 60 55.0
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 1.9e-10 68.9 52 63.5
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.9e-10 68.9 61 63.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.9e-10 68.9 52 71.2
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.5e-10 68.6 60 55.0
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.5e-10 68.6 61 55.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 4.3e-10 67.8 58 62.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 4.3e-10 67.8 52 69.2
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 5.6e-10 67.4 60 60.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 9.6e-10 66.6 60 63.3
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 9.6e-10 66.6 62 53.2
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.6e-09 65.9 64 57.8
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.1e-09 65.5 50 68.0
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.1e-09 65.5 60 56.7
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.8e-09 65.1 62 51.6
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 4.8e-09 64.3 62 58.1
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 8.1e-09 63.5 56 57.1
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 8.1e-09 63.5 60 56.7
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.1e-08 63.2 62 53.2
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.1e-08 63.2 56 57.1
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.1e-08 63.2 56 57.1
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 2.4e-08 62.0 56 55.4
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.4e-08 62.0 56 55.4
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.4e-08 62.0 56 55.4
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.1e-08 61.6 62 51.6
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 3.1e-08 61.6 64 50.0
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 3.1e-08 61.6 58 51.7
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 3.1e-08 61.6 62 53.2
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 4.0e-08 61.2 60 50.0
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 4.0e-08 61.2 44 75.0
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 5.3e-08 60.8 60 55.0
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.2e-07 59.7 52 63.5
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 1.2e-07 59.7 60 50.0
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.5e-07 59.3 56 53.6
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 1.5e-07 59.3 52 61.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 2.6e-07 58.5 56 51.8
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-07 58.5 56 51.8
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-07 58.5 56 51.8
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.6e-07 58.5 56 51.8
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 4.5e-07 57.8 61 54.1
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 7.6e-07 57.0 54 55.6
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 9.9e-07 56.6 57 54.4
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.9e-06 55.1 65 46.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 2.9e-06 55.1 65 46.2
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.9e-06 54.3 62 43.5


User provided reference genes

Program Settings