Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 0.0e+00 1610.5 810 100.0
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 0.0e+00 1080.5 681 85.0
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 1.9e-254 882.9 614 74.3
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.5e-254 882.5 629 72.8
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 6.4e-250 867.8 631 71.3
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 6.6e-247 857.8 632 71.2
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 8.9e-244 847.4 644 69.3
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 4.4e-243 845.1 632 71.7
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 1.3e-239 833.6 631 70.7
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.6e-235 819.3 709 64.6
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 4.4e-235 818.5 657 67.9
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.2e-229 800.4 626 68.1
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 2.2e-218 763.1 629 63.3
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.9e-218 762.7 637 62.3
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.9e-217 760.0 634 63.1
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 2.5e-214 749.6 637 62.0
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.3e-213 747.3 635 61.4
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 4.8e-213 745.3 631 61.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 2.0e-211 740.0 631 61.2
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.7e-210 736.9 642 60.6
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.1e-208 729.9 630 61.1
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 3.7e-205 719.2 638 59.7
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 2.6e-203 713.0 619 59.9
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 3.4e-203 712.6 638 59.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 4.5e-203 712.2 643 58.8
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 6.5e-202 708.4 631 59.4
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.6e-200 703.7 658 56.2
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.1e-200 703.4 631 59.6
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 6.7e-199 698.4 645 56.9
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 8.7e-199 698.0 703 54.8
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 8.7e-199 698.0 639 59.6
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.9e-198 696.8 634 58.7
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 9.6e-198 694.5 646 56.7
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.6e-197 693.7 646 56.5
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.4e-196 689.9 639 59.0
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.4e-196 689.9 643 57.1
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 2.2e-194 683.3 741 51.8
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.9e-194 682.9 641 57.1
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.4e-193 680.6 685 54.5
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.9e-193 680.2 634 57.1
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.5e-192 676.0 642 55.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 3.5e-192 676.0 664 54.5
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.3e-191 673.3 655 54.8
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.9e-191 672.5 639 57.1
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.1e-190 671.0 651 56.4
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 2.5e-190 669.8 663 53.4
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 4.3e-190 669.1 679 54.3
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 5.7e-190 668.7 685 54.2
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 7.4e-190 668.3 621 57.0
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 3.7e-189 666.0 678 53.8
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.7e-189 666.0 639 56.7
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 6.3e-189 665.2 642 55.6
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.2e-189 664.8 685 53.0
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.4e-188 664.1 639 56.5
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 4.1e-188 662.5 643 54.7
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 1.5e-187 660.6 677 53.9
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 4.5e-187 659.1 642 54.5
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-186 657.5 643 54.7
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.9e-186 656.4 643 54.6
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 2.9e-186 656.4 651 54.1
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 3.8e-186 656.0 642 55.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 6.5e-186 655.2 645 55.0
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 1.1e-185 654.4 651 54.2
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 2.5e-185 653.3 645 54.0
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 4.2e-185 652.5 651 53.5
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 9.4e-185 651.4 638 54.4
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.6e-184 650.6 452 75.9
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.6e-184 650.6 650 53.2
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 2.1e-184 650.2 656 54.3
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.7e-184 649.8 642 56.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 3.6e-184 649.4 649 53.9
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 3.9e-183 646.0 577 59.3
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 6.7e-183 645.2 652 52.9
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.1e-182 644.4 650 52.9
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.5e-182 644.0 647 53.9
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 2.5e-182 643.3 704 52.1
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 5.7e-182 642.1 619 54.9
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 7.4e-182 641.7 653 53.1
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.3e-181 641.0 652 54.4
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 8.2e-181 638.3 644 53.6
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 3.1e-180 636.3 640 52.0
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 9.1e-180 634.8 631 55.9
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 2.6e-179 633.3 626 53.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 1.1e-177 627.9 662 52.4
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.9e-177 627.1 645 52.6
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.6e-176 624.0 631 53.6
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.1e-176 623.6 643 52.3
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 6.1e-176 622.1 652 52.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 2.3e-175 620.2 667 51.3
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.1e-175 619.0 576 57.3
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 6.7e-175 618.6 553 60.2
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 3.3e-174 616.3 641 52.6
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 2.8e-173 613.2 645 52.7
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 6.3e-173 612.1 614 53.9
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.1e-172 609.8 611 52.4
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 3.1e-172 609.8 664 50.9
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.0e-171 607.1 619 53.5
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 3.5e-171 606.3 648 52.0
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.3e-170 604.4 649 51.9
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.3e-170 604.4 665 50.2
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.0e-170 602.4 616 53.4
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 6.5e-170 602.1 624 53.0
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 1.9e-169 600.5 678 51.6
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.6e-168 597.4 636 51.7
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 6.1e-168 595.5 648 51.4
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 8.0e-168 595.1 648 51.4
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 8.0e-168 595.1 651 50.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.4e-167 594.3 639 51.6
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 8.8e-167 591.7 665 49.3
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 2.6e-166 590.1 569 55.4
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 7.5e-166 588.6 639 52.3
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.2e-163 581.3 658 50.5
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 7.7e-163 578.6 604 51.2
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 7.7e-163 578.6 609 51.9
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.2e-162 577.0 649 51.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 2.9e-162 576.6 621 49.9
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 3.2e-161 573.2 585 54.7
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.6e-160 570.9 622 50.3
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 2.1e-160 570.5 646 49.1
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.5e-158 564.3 642 49.5
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.0e-158 563.9 582 52.6
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 2.6e-158 563.5 615 50.9
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-153 548.1 617 48.1
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 1.6e-152 544.3 664 47.4
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.3e-151 540.4 637 47.1
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 4.4e-150 536.2 633 49.4
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 4.9e-149 532.7 629 48.2
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.8e-148 530.8 639 45.9
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.0e-135 488.4 451 55.9
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.8e-135 487.6 467 55.2
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 2.8e-128 463.8 600 46.8
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 6.2e-128 462.6 717 42.0
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 1.3e-125 454.9 490 50.4
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 2.1e-120 437.6 450 53.6
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.8e-120 437.2 727 38.0
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 4.6e-115 419.9 364 58.8
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.6e-107 393.3 621 40.4
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.7e-106 391.3 639 39.9
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 6.6e-106 389.4 613 40.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.6e-104 384.8 607 40.2
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.6e-104 384.8 326 59.8
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 5.3e-103 379.8 605 38.0
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 5.3e-103 379.8 604 38.7
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.7e-101 374.8 619 40.2
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.1e-99 367.9 724 36.6
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 5.8e-94 349.7 607 37.2
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.2e-93 347.8 741 34.0
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 1.6e-88 331.6 498 41.2
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.2e-86 325.5 629 36.9
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 3.8e-85 320.5 796 30.7
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.2e-83 315.5 466 40.3
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.4e-79 302.0 496 39.3
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 1.3e-77 295.4 747 30.5
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.1e-73 282.3 498 38.4
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.1e-73 282.3 373 43.2
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.8e-72 276.9 213 68.1
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 3.1e-71 274.2 260 56.9
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.0e-70 271.6 208 66.3
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 7.9e-67 259.6 473 35.7
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 6.7e-58 229.9 324 41.4
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.8e-35 154.8 246 38.2
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.5e-30 137.5 115 60.0
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.7e-25 120.6 80 68.8
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.7e-24 117.9 66 83.3
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 3.5e-22 111.3 70 71.4
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 1.0e-21 109.8 184 38.0
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.8e-18 99.0 109 52.3
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 3.5e-14 84.7 164 36.0
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 3.6e-11 74.7 164 35.4
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 1.4e-10 72.8 52 65.4
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 9.9e-09 66.6 54 55.6
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-08 66.2 71 52.1
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 3.2e-07 61.6 82 42.7
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 6.0e-06 57.4 80 46.2


User provided reference genes

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