Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-94 349.7 184 100.0
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.3e-94 349.7 184 100.0
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 3.1e-67 258.8 178 78.7
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 3.4e-66 255.4 176 77.3
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 4.9e-65 251.5 176 77.3
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.9e-64 249.6 154 82.5
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.7e-62 243.0 154 80.5
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.3e-62 242.7 176 72.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 5.1e-62 241.5 176 73.3
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 8.7e-62 240.7 158 80.4
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 1.1e-59 233.8 175 72.6
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 3.4e-58 228.8 176 69.3
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 5.8e-58 228.0 175 68.0
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 7.6e-58 227.6 175 69.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 7.6e-58 227.6 176 67.6
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 4.9e-57 224.9 177 67.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.9e-56 223.0 159 71.7
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 3.2e-56 222.2 179 67.0
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 3.2e-56 222.2 177 65.5
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 9.3e-56 220.7 155 74.2
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.2e-55 220.3 176 67.6
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.6e-55 219.9 176 68.2
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 4.6e-55 218.4 176 67.6
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.6e-55 218.4 176 67.6
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 4.6e-55 218.4 182 64.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 6.0e-55 218.0 176 65.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.0e-54 217.2 176 67.0
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.3e-54 216.9 154 74.0
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.3e-54 216.9 176 67.6
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.7e-54 216.5 154 70.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.0e-54 215.7 175 68.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 6.6e-54 214.5 183 62.3
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.5e-53 212.6 176 66.5
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 5.6e-53 211.5 164 68.9
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 9.6e-53 210.7 177 63.8
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.6e-52 209.9 161 69.6
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.6e-52 209.9 179 62.6
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 8.1e-52 207.6 151 70.2
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.1e-51 207.2 176 65.3
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.4e-51 206.8 150 69.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.8e-51 206.5 154 70.8
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 3.1e-51 205.7 175 62.9
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.0e-51 205.3 181 62.4
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 4.0e-51 205.3 182 62.6
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 9.0e-51 204.1 177 64.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 9.0e-51 204.1 176 62.5
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.2e-50 203.8 156 66.7
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.5e-50 203.4 175 65.1
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.0e-50 203.0 179 60.3
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 9.9e-50 200.7 161 62.1
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-49 200.3 176 59.1
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.9e-49 199.1 182 54.9
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 8.4e-49 197.6 177 61.0
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 8.4e-49 197.6 178 57.3
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.1e-48 197.2 240 50.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.9e-48 196.4 208 54.3
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 5.4e-48 194.9 178 61.8
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.1e-48 194.5 176 58.0
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 9.3e-48 194.1 164 61.6
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 9.3e-48 194.1 186 53.8
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.6e-47 193.4 176 57.4
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.7e-47 192.6 176 56.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 1.0e-46 190.7 146 65.8
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.8e-46 189.9 151 62.9
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.3e-46 189.5 178 57.9
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 3.9e-46 188.7 176 58.0
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 6.7e-46 188.0 185 58.9
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 8.7e-46 187.6 175 60.6
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.5e-45 186.8 151 60.9
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.9e-45 186.4 151 64.2
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.9e-45 186.4 161 60.2
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 4.3e-45 185.3 163 62.0
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 5.6e-45 184.9 148 60.1
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 5.6e-45 184.9 148 60.1
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 9.6e-45 184.1 277 44.4
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 2.1e-44 183.0 149 59.1
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.7e-44 182.2 148 58.8
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 6.2e-44 181.4 178 54.5
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 6.2e-44 181.4 153 62.7
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.1e-44 181.0 184 55.4
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.1e-43 180.6 148 58.1
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.4e-43 180.3 180 53.3
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 2.4e-43 179.5 177 55.9
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 2.4e-43 179.5 123 72.4
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 3.1e-43 179.1 178 53.9
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 3.1e-43 179.1 148 58.1
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 5.3e-43 178.3 145 58.6
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 5.3e-43 178.3 145 58.6
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 9.0e-43 177.6 149 63.1
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 9.0e-43 177.6 176 56.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.2e-42 177.2 145 58.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.5e-42 176.8 145 62.8
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.0e-42 176.4 145 57.9
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.6e-42 176.0 145 58.6
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 4.5e-42 175.3 141 66.7
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.7e-41 173.3 178 53.9
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-41 172.6 178 55.1
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.8e-41 172.2 179 54.2
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 4.9e-41 171.8 176 54.5
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.9e-41 171.8 175 57.1
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 6.5e-41 171.4 178 52.8
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 8.4e-41 171.0 177 52.5
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 1.1e-40 170.6 155 60.0
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 7.1e-40 167.9 179 50.8
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 3.9e-38 162.2 150 56.0
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 5.1e-38 161.8 229 44.1
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 5.1e-38 161.8 176 52.8
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 4.3e-37 158.7 137 56.9
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 8.2e-36 154.5 177 52.5
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.1e-35 152.1 177 48.0
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 4.5e-34 148.7 121 62.0
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 7.6e-34 147.9 155 52.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 3.8e-33 145.6 123 59.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.4e-32 143.7 155 54.8
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.9e-32 143.3 151 53.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 5.5e-32 141.7 124 55.6
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.7e-31 139.4 120 56.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-31 138.7 157 47.8
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-31 138.7 153 49.7
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-31 138.7 153 49.7
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.3e-30 136.3 120 55.0
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 3.9e-30 135.6 120 60.8
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.9e-29 133.3 247 36.0
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 2.5e-29 132.9 174 43.7
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 4.5e-26 122.1 163 43.6
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 4.5e-26 122.1 128 53.9
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 4.5e-26 122.1 128 53.9
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 7.9e-23 111.3 209 37.8
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.0e-22 110.9 100 54.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.3e-22 109.8 124 50.8
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 7.4e-21 104.8 85 64.7
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.4e-21 104.8 175 37.1
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 6.9e-19 98.2 106 46.2
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 3.8e-17 92.4 169 35.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 7.9e-15 84.7 115 43.5
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 4.4e-13 79.0 90 46.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.2e-12 76.6 90 45.6
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.7e-12 75.9 90 46.7
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 3.7e-12 75.9 90 46.7
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 5.3e-11 72.0 90 43.3
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.0e-10 70.1 86 44.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.0e-10 70.1 86 44.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 3.8e-09 65.9 48 60.4
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.7e-07 59.7 48 62.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.7e-07 58.9 61 57.4
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 5.2e-06 55.5 63 50.8


User provided reference genes

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