Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.9e-125 452.6 237 100.0
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 5.3e-64 248.4 146 93.8
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 9.1e-64 247.7 146 93.2
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.2e-53 211.5 145 77.2
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 1.4e-51 207.2 145 75.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 8.9e-51 204.5 145 74.5
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-50 203.8 145 75.2
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 3.7e-49 199.1 146 70.5
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 3.7e-49 199.1 142 75.4
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 6.3e-49 198.4 144 74.3
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 8.3e-49 198.0 145 73.1
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 3.2e-48 196.1 145 73.1
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 4.1e-48 195.7 144 74.3
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.6e-47 193.7 146 71.2
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 7.8e-47 191.4 145 70.3
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.1e-45 187.6 143 69.2
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 2.5e-45 186.4 141 70.2
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 7.3e-45 184.9 145 66.9
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 7.3e-45 184.9 145 66.2
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 7.3e-45 184.9 145 69.0
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 7.3e-45 184.9 145 68.3
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 9.5e-45 184.5 145 65.5
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.2e-44 184.1 145 66.2
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.6e-44 183.7 144 69.4
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 2.1e-44 183.3 145 66.2
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 4.7e-44 182.2 145 66.2
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 6.1e-44 181.8 145 66.2
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 6.1e-44 181.8 145 64.1
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 8.0e-44 181.4 141 67.4
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-43 180.6 145 64.8
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.8e-43 180.3 145 64.8
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.3e-43 179.9 145 65.5
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.2e-43 178.7 123 78.0
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 6.8e-43 178.3 145 63.4
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.8e-42 175.3 145 62.1
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.3e-41 174.1 145 62.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.7e-41 173.7 145 64.1
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.9e-41 172.9 145 61.4
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 3.7e-41 172.6 145 60.7
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.9e-41 172.2 145 62.1
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 4.9e-41 172.2 144 61.1
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.4e-41 171.8 145 60.7
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.4e-41 171.8 145 60.7
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 1.9e-40 170.2 145 64.8
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.1e-40 169.1 145 60.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 5.4e-40 168.7 145 62.1
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 9.2e-40 167.9 172 57.0
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 2.0e-39 166.8 144 60.4
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.7e-39 166.4 145 61.4
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 4.6e-39 165.6 145 64.1
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.3e-38 164.1 145 62.8
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.7e-38 163.7 163 55.2
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.7e-38 163.7 164 53.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 2.3e-38 163.3 145 57.9
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 3.0e-38 162.9 144 63.9
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 3.0e-38 162.9 145 58.6
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 3.0e-38 162.9 142 60.6
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.0e-38 162.2 141 61.0
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 8.6e-38 161.4 145 63.4
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.9e-37 160.2 119 69.7
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 2.5e-37 159.8 145 57.9
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 4.3e-37 159.1 145 60.7
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.3e-37 159.1 145 62.1
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 4.3e-37 159.1 145 61.4
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 5.6e-37 158.7 112 73.2
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.2e-36 157.5 145 58.6
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.2e-36 157.5 145 58.6
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 6.2e-36 155.2 145 57.9
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.8e-35 153.7 145 57.9
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.3e-35 153.3 126 63.5
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 2.3e-35 153.3 145 55.9
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.3e-35 153.3 119 67.2
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.1e-35 152.9 142 58.5
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 2.6e-34 149.8 140 57.1
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 3.4e-34 149.4 140 57.1
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 3.7e-33 146.0 141 58.2
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 6.4e-33 145.2 141 57.4
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 6.4e-33 145.2 110 69.1
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.4e-32 143.3 145 55.9
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.1e-32 142.5 110 67.3
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 7.1e-32 141.7 143 55.2
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 1.2e-31 141.0 144 54.9
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 2.1e-31 140.2 165 49.1
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 2.7e-31 139.8 143 55.2
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 4.6e-31 139.0 143 52.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 6.0e-31 138.7 143 53.8
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.7e-30 137.1 108 63.0
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.7e-30 137.1 126 57.9
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 3.0e-30 136.3 120 59.2
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 3.0e-30 136.3 110 63.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 5.1e-30 135.6 141 52.5
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 6.6e-30 135.2 145 56.6
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.5e-29 134.0 145 51.0
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.5e-29 133.3 143 53.1
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 2.5e-29 133.3 108 60.2
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 4.3e-29 132.5 145 50.3
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.3e-29 132.5 145 49.7
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 7.3e-29 131.7 132 55.3
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.2e-28 131.0 109 62.4
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.1e-28 130.2 143 51.7
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.6e-28 129.4 108 60.2
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.7e-28 129.0 143 51.7
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 8.1e-28 128.3 127 54.3
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 8.1e-28 128.3 145 49.7
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 1.4e-27 127.5 126 52.4
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.1e-27 126.3 108 59.3
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.1e-27 126.3 140 49.3
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 3.1e-27 126.3 144 51.4
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 5.2e-27 125.6 104 63.5
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 5.2e-27 125.6 132 50.0
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.8e-27 125.2 143 50.3
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 2.0e-26 123.6 145 50.3
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 3.4e-26 122.9 144 49.3
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 4.4e-26 122.5 105 58.1
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 4.4e-26 122.5 105 58.1
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.4e-26 122.5 132 50.8
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 7.6e-26 121.7 107 57.9
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.6e-26 121.7 127 51.2
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.3e-25 120.9 106 53.8
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.3e-25 120.9 105 58.1
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 1.3e-25 120.9 105 58.1
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.7e-25 120.6 104 57.7
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 1.7e-25 120.6 108 56.5
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.7e-25 120.6 105 59.0
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 2.2e-25 120.2 108 54.6
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.9e-25 119.8 105 58.1
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.9e-25 119.8 105 58.1
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 2.9e-25 119.8 105 58.1
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 2.9e-25 119.8 108 57.4
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 3.7e-25 119.4 105 59.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 3.7e-25 119.4 145 47.6
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 6.4e-25 118.6 106 51.9
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 6.4e-25 118.6 106 55.7
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 6.4e-25 118.6 110 55.5
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 6.4e-25 118.6 133 52.6
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 6.0e-23 112.1 97 61.9
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 5.1e-22 109.0 110 55.5
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.1e-22 109.0 126 49.2
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 8.6e-22 108.2 108 55.6
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 2.5e-21 106.7 122 45.9
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 9.6e-21 104.8 125 46.4
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 1.4e-19 100.9 142 43.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-18 96.3 91 57.1
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 5.8e-18 95.5 84 57.1
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.1e-11 74.7 139 38.1
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.4e-10 69.3 141 39.0
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 2.4e-08 63.5 43 69.8


User provided reference genes

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