Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 1.1e-144 516.5 252 100.0
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 1.1e-144 516.5 252 100.0
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.6e-119 433.0 252 84.1
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 1.5e-117 426.4 252 82.1
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 9.2e-115 417.2 252 82.1
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.0e-113 413.7 252 81.0
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 3.0e-113 412.1 252 81.0
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 3.9e-113 411.8 249 80.7
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 3.9e-113 411.8 252 79.0
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 1.3e-105 386.7 232 81.5
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 4.3e-104 381.7 229 81.7
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 7.1e-99 364.4 251 72.9
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 2.1e-98 362.8 251 72.1
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 3.5e-98 362.1 251 71.3
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.9e-97 358.6 251 71.7
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 5.1e-97 358.2 251 73.3
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 5.1e-97 358.2 250 73.6
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.1e-96 357.1 250 70.8
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.5e-96 356.7 251 71.3
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 1.3e-95 353.6 251 70.5
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.6e-95 353.2 251 70.9
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 3.7e-95 352.1 256 69.5
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 3.7e-95 352.1 251 70.9
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.1e-94 350.5 251 70.1
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.4e-94 350.1 251 71.3
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 1.2e-93 347.1 251 68.1
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 5.8e-93 344.7 251 68.5
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 7.6e-93 344.4 251 68.9
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.3e-92 343.6 250 69.6
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.7e-92 343.2 252 67.9
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 8.4e-92 340.9 251 68.1
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 1.4e-91 340.1 251 68.5
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 2.5e-91 339.3 251 67.3
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 5.5e-91 338.2 251 68.1
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 2.7e-90 335.9 251 68.1
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 2.7e-90 335.9 253 67.6
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.7e-90 335.9 251 67.3
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 3.5e-90 335.5 252 67.9
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 7.9e-90 334.3 251 66.1
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 7.9e-90 334.3 251 64.5
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.3e-89 333.6 251 65.3
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.3e-89 333.6 251 66.1
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 3.9e-89 332.0 247 68.4
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 8.7e-89 330.9 251 64.9
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 4.3e-88 328.6 252 65.5
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 7.4e-88 327.8 252 67.1
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 9.6e-88 327.4 254 67.3
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 4.8e-87 325.1 252 63.9
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.4e-86 323.6 252 63.5
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.4e-86 323.6 253 64.4
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 5.3e-86 321.6 252 63.5
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 5.3e-86 321.6 251 68.1
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 5.3e-86 321.6 252 63.1
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 1.2e-85 320.5 251 63.3
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 2.0e-85 319.7 252 62.7
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 2.0e-85 319.7 256 62.9
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.0e-85 319.7 261 65.1
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 2.6e-85 319.3 251 62.9
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 3.4e-85 318.9 251 62.9
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 4.5e-85 318.5 251 62.5
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 1.0e-84 317.4 251 66.1
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.7e-84 316.6 249 64.7
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 2.2e-84 316.2 252 61.5
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 3.8e-84 315.5 251 62.2
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 4.9e-84 315.1 252 61.9
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.1e-83 313.9 251 64.9
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.4e-83 313.5 252 61.9
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 7.1e-83 311.2 249 63.5
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 2.1e-82 309.7 262 59.9
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 2.7e-82 309.3 316 56.0
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 3.5e-82 308.9 258 60.5
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.0e-81 307.4 249 63.1
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 2.3e-81 306.2 232 65.9
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 8.7e-81 304.3 245 59.6
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 3.3e-80 302.4 232 66.4
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.3e-80 302.4 253 62.5
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.3e-79 300.4 234 63.2
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 1.4e-78 297.0 236 61.9
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.4e-78 296.2 302 56.3
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 5.3e-78 295.0 240 62.5
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 1.5e-77 293.5 247 58.3
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 2.0e-77 293.1 208 65.9
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 5.9e-77 291.6 259 55.2
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.3e-76 290.4 273 54.9
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.7e-76 290.0 241 59.3
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 7.9e-74 281.2 302 51.0
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.0e-73 280.8 190 71.1
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 6.7e-73 278.1 251 61.0
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 6.7e-73 278.1 200 68.5
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.5e-72 276.9 199 68.3
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 2.0e-72 276.6 188 71.8
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 5.7e-72 275.0 218 61.0
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.8e-71 272.7 244 57.8
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 5.0e-68 261.9 188 67.0
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.3e-65 253.1 248 52.8
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 8.8e-65 251.1 246 52.4
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 2.8e-63 246.1 249 50.6
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 2.4e-62 243.0 208 55.8
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 7.0e-62 241.5 245 51.0
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 2.0e-56 223.4 208 56.7
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 2.8e-55 219.5 154 66.9
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 5.9e-53 211.8 165 63.6
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 8.0e-50 201.4 121 76.9
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 9.5e-35 151.4 217 38.2
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 3.2e-30 136.3 205 39.5
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 6.4e-23 112.1 197 34.0
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 7.0e-22 108.6 168 39.9
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.6e-21 107.5 168 39.3
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.0e-20 104.8 137 48.9
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.1e-19 101.3 204 33.8
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 1.9e-19 100.5 204 34.8
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 5.6e-19 99.0 74 74.3
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 1.1e-17 94.7 161 33.5
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 9.8e-16 88.2 45 86.7
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 9.8e-16 88.2 45 86.7
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 4.9e-15 85.9 76 55.3
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 6.6e-12 75.5 132 35.6
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 9.5e-11 71.6 66 54.5


User provided reference genes

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