Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LJ4E0Z Arachis hypogaea HOM05D007208 ORTHO05D009090 1.7e-178 630.2 632 100.0
arahy.Tifrunner.gnm1.ann1.B872W9 Arachis hypogaea HOM05D007208 ORTHO05D009090 3.9e-170 602.4 632 95.4
arahy.Tifrunner.gnm1.ann1.KEA2PN Arachis hypogaea HOM05D007208 ORTHO05D009090 1.8e-159 567.0 632 95.6
arahy.Tifrunner.gnm1.ann1.55T2PK Arachis hypogaea HOM05D007208 ORTHO05D009090 1.5e-105 387.9 326 75.8
VMungo1127G1221 Vigna mungo HOM05D007208 ORTHO05D009090 3.3e-84 317.0 635 67.7
Phvul.011G168600 Phaseolus vulgaris HOM05D007208 ORTHO05D009090 2.1e-78 297.7 635 64.6
Glyma.10G265500 Glycine max HOM05D007208 ORTHO05D009090 2.4e-71 274.2 629 60.7
Peaxi162Scf01258g00013 Petunia axillaris HOM05D007208 ORTHO05D009090 4.0e-58 230.3 610 66.6
arahy.Tifrunner.gnm1.ann1.VA1KA7 Arachis hypogaea HOM05D007208 ORTHO05D009090 9.3e-55 219.2 384 57.6
Medtr8g054410 Medicago truncatula HOM05D007208 ORTHO05D009090 6.0e-54 216.5 636 65.1
Lalb_Chr03g0031321 Lupinus albus HOM05D007208 ORTHO05D009090 1.0e-53 215.7 615 73.2
Psat4g156960 Pisum sativum HOM05D007208 ORTHO05D009090 1.3e-53 215.3 631 69.3
Ca_27341_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 7.3e-52 209.5 620 69.4
Ca_30865_v3 Cicer arietinum L. HOM05D007208 ORTHO05D009090 7.3e-52 209.5 620 69.4
Lj3g0013344 Lotus japonicus HOM05D007208 ORTHO05D009090 9.6e-52 209.1 609 72.1
TPR.G16118 Trifolium pratense HOM05D007208 ORTHO05D009090 5.3e-50 203.4 626 62.9
Ah.01g002470 Amaranthus hybridus HOM05D007208 ORTHO05D009090 1.5e-49 201.8 324 52.5
Sp1g02490 Schrenkiella parvula HOM05D007208 ORTHO05D009090 1.1e-47 195.7 608 64.8
Oeu041287.1 Olea europaea HOM05D007208 ORTHO05D009090 3.2e-47 194.1 613 61.3
EL10Ac9g22658 Beta vulgaris HOM05D007208 ORTHO05D009090 4.2e-47 193.7 609 69.6
AT1G03560 Arabidopsis thaliana HOM05D007208 ORTHO05D009090 9.3e-47 192.6 608 63.3
Thhalv10007014m.g Eutrema salsugineum HOM05D007208 ORTHO05D009090 1.2e-46 192.2 608 62.2
CARHR002920 Cardamine hirsuta HOM05D007208 ORTHO05D009090 6.0e-46 189.9 608 63.5
AL1G13070 Arabidopsis lyrata HOM05D007208 ORTHO05D009090 1.3e-45 188.7 608 62.8
A10p02100 Brassica napus HOM05D007208 ORTHO05D009090 1.3e-45 188.7 609 59.6
BcaB02g06917 Brassica carinata HOM05D007208 ORTHO05D009090 1.8e-45 188.3 610 58.2
BcaC05g24521 Brassica carinata HOM05D007208 ORTHO05D009090 3.0e-45 187.6 610 58.9
BolC5t28979H Brassica oleracea HOM05D007208 ORTHO05D009090 3.0e-45 187.6 610 58.9
BraA10t42479Z Brassica rapa HOM05D007208 ORTHO05D009090 3.0e-45 187.6 609 59.6
C05p02010 Brassica napus HOM05D007208 ORTHO05D009090 1.1e-44 185.7 610 58.7
FAN05G4557 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.4e-42 178.7 618 68.0
CAN.G168.33 Capsicum annuum HOM05D007208 ORTHO05D009090 2.4e-42 177.9 615 66.8
Aa31LG1G20920 Aethionema arabicum HOM05D000389 ORTHO05D009090 5.8e-41 173.3 604 57.3
SGA_v2.0_scaffold261G45922 Striga asiatica HOM05D007208 ORTHO05D009090 7.6e-41 172.9 632 67.6
Nn1g06681 Nelumbo nucifera HOM05D007208 ORTHO05D009090 3.8e-40 170.6 171 52.6
CANSAT35G0587 Cannabis sativa HOM05D007208 ORTHO05D009090 1.1e-39 169.1 174 52.3
Atru.chr6.3038 Acer truncatum HOM05D007208 ORTHO05D009090 1.9e-39 168.3 171 50.9
MELO3C018751.2 Cucumis melo HOM05D007208 ORTHO05D009090 4.2e-39 167.2 117 70.1
Cc05_g06710 Coffea canephora HOM05D007208 ORTHO05D009090 5.5e-39 166.8 175 53.7
FvH4_6g45000 Fragaria vesca HOM05D007208 ORTHO05D009090 5.5e-39 166.8 187 50.8
FAN02G1502 Fragaria x ananassa HOM05D007208 ORTHO05D009090 1.2e-38 165.6 189 49.7
GSVIVG01030557001 Vitis vinifera HOM05D007208 ORTHO05D009090 1.6e-38 165.2 170 56.5
MD17G1080900 Malus domestica HOM05D007208 ORTHO05D009090 2.1e-38 164.9 183 50.3
RcHm_v2.0_Chr4g0446301 Rosa chinensis HOM05D007208 ORTHO05D009090 2.7e-38 164.5 171 51.5
RcHm_v2.0_Chr2g0162271 Rosa chinensis HOM05D007208 ORTHO05D009090 4.6e-38 163.7 115 86.1
Aqoxy1G02638 Aquilegia oxysepala HOM05D007208 ORTHO05D009090 1.0e-37 162.5 606 63.2
Solyc10g008510.3 Solanum lycopersicum HOM05D007208 ORTHO05D009090 1.8e-37 161.8 110 84.5
CSS0042005 Camellia sinensis var. sinensis HOM05D007208 ORTHO05D009090 2.3e-37 161.4 612 58.7
TAR629G2939 Trochodendron aralioides HOM05D007208 ORTHO05D009090 3.9e-37 160.6 171 50.9
CsaV3_7G004270 Cucumis sativus L. HOM05D007208 ORTHO05D009090 5.1e-37 160.2 167 51.5
Sopen10g004330 Solanum pennellii HOM05D007208 ORTHO05D009090 8.7e-37 159.5 109 83.5
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 8.7e-37 159.5 171 49.7
Migut.H01048 Erythranthe guttata HOM05D007208 ORTHO05D009090 1.5e-36 158.7 486 77.0
Nitab4.5_0000998g0040 Nicotiana tabacum HOM05D007208 ORTHO05D009090 1.5e-36 158.7 109 83.5
Potri.019G103400 Populus trichocarpa HOM05D007208 ORTHO05D009090 1.5e-36 158.7 195 48.2
PGSC0003DMG400021677 Solanum tuberosum HOM05D007208 ORTHO05D009090 1.5e-36 158.7 110 82.7
Carub.0001s0270 Capsella rubella HOM05D007208 ORTHO05D009090 4.3e-36 157.1 562 63.9
ClCG02G001180 Citrullus lanatus HOM05D007208 ORTHO05D009090 7.4e-36 156.4 157 54.1
MBI18_g13208_MAGBIO Magnolia biondii HOM05D007208 ORTHO05D009090 7.4e-36 156.4 176 48.3
Nitab4.5_0000635g0090 Nicotiana tabacum HOM05D007208 ORTHO05D009090 7.4e-36 156.4 566 70.0
FAN09G1518 Fragaria x ananassa HOM05D007208 ORTHO05D009090 5.3e-34 150.2 187 47.6
Hma1.2p1_0875F.1_g231470 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 2.9e-32 144.4 103 82.5
Sed0017509 Sechium edule HOM05D007208 ORTHO05D009090 4.9e-32 143.7 157 49.7
Sc21g0002370 Simmondsia chinensis HOM05D007208 ORTHO05D009090 8.4e-32 142.9 172 47.1
Thecc.02G175200 Theobroma cacao HOM05D007208 ORTHO05D009090 2.5e-31 141.4 183 45.4
SalBow1G0905 Salvia bowleyana HOM05D007208 ORTHO05D009090 4.2e-31 140.6 312 41.3
Manes.12G086900 Manihot esculenta HOM05D007208 ORTHO05D009090 1.2e-30 139.0 98 82.7
Gohir.D02G181800 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.6e-30 138.7 169 49.7
ATR0626G143 Amborella trichopoda HOM05D007208 ORTHO05D009090 4.6e-30 137.1 203 39.9
Thecc.05G160800 Theobroma cacao HOM05D007208 ORTHO05D009090 3.9e-29 134.0 176 44.3
COL.COLO4_35409 Corchorus olitorius HOM05D007208 ORTHO05D009090 3.3e-28 131.0 166 47.0
Rhsim06G0149200 Rhododendron simsii HOM05D007208 ORTHO05D009090 7.4e-28 129.8 92 85.9
PGR042G3663 Punica granatum HOM05D007208 ORTHO05D009090 9.7e-28 129.4 143 51.7
PSO541G2896 Papaver somniferum HOM05D007208 ORTHO05D009090 2.2e-27 128.3 205 42.9
arahy.Tifrunner.gnm1.ann1.APG80P Arachis hypogaea HOM05D007208 ORTHO05D009090 2.8e-27 127.9 408 54.9
HPP92_009506 Vanilla planifolia HOM05D007208 ORTHO05D009090 2.8e-27 127.9 192 45.8
PSO675G0351 Papaver somniferum HOM05D007208 ORTHO05D009090 4.8e-27 127.1 191 41.4
Sabra19G0114200 Salix brachista HOM05D007208 ORTHO05D009090 6.3e-27 126.7 188 42.0
Zm00001eb069300 Zea mays HOM05D007208 ORTHO05D009090 6.3e-27 126.7 638 55.0
Lsat_1_v5_gn_8_132240 Lactuca sativa HOM05D007208 ORTHO05D009090 2.4e-26 124.8 165 47.3
Prupe.3G234000 Prunus persica HOM05D007208 ORTHO05D009090 6.9e-26 123.2 143 49.7
ECA233G0015 Erigeron canadensis HOM05D007208 ORTHO05D009090 2.0e-25 121.7 94 64.9
HanXRQChr15g0492931 Helianthus annuus HOM05D007208 ORTHO05D009090 3.4e-25 120.9 93 75.3
CiPaw.03G172500 Carya illinoinensis HOM05D007208 ORTHO05D009090 4.5e-25 120.6 137 51.1
Cpa.g.sc34.123 Carica papaya HOM05D007208 ORTHO05D009090 5.9e-25 120.2 149 48.3
HanXRQChr17g0557691 Helianthus annuus HOM05D007208 ORTHO05D009090 1.7e-24 118.6 92 73.9
Ciclev10014552m.g Citrus clementina HOM05D007208 ORTHO05D009090 2.2e-24 118.2 143 47.6
QL10p048755 Quercus lobata HOM05D007208 ORTHO05D009090 2.9e-24 117.9 137 49.6
Hma1.2p1_0875F.1_g231460 Hydrangea macrophylla HOM05D007208 ORTHO05D009090 3.8e-24 117.5 86 82.6
Duzib248G0625 Durio zibethinus HOM05D007208 ORTHO05D009090 6.5e-24 116.7 86 82.6
Haze_13114 Corylus avellana HOM05D007208 ORTHO05D009090 1.1e-23 115.9 140 49.3
Hund14539 Selenicereus undatus HOM05D007208 ORTHO05D009090 1.9e-23 115.2 163 42.3
Lj8P115T34 Lonicera japonica HOM05D007208 ORTHO05D009090 4.2e-23 114.0 84 83.3
SEGI_00392 Sequoiadendron giganteum HOM05D007208 ORTHO05D009090 7.2e-23 113.2 644 44.4
TWI75G0324 Tripterygium wilfordii HOM05D007208 ORTHO05D009090 9.4e-23 112.8 151 45.7
SHI10482 Sapria himalayana HOM05D007208 ORTHO05D009090 1.2e-22 112.5 182 40.7
Manes.12G087100 Manihot esculenta HOM05D007208 ORTHO05D009090 2.1e-22 111.7 135 49.6
Eucgr.A01782 Eucalyptus grandis HOM05D007208 ORTHO05D009090 3.6e-22 110.9 85 78.8
Gorai.005G204300 Gossypium raimondii HOM05D007208 ORTHO05D009090 7.9e-22 109.8 86 80.2
Gohir.A03G158600 Gossypium hirsutum HOM05D007208 ORTHO05D009090 1.0e-21 109.4 84 79.8
CDE05G0255 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 5.7e-20 103.6 79 65.8
CDE05G2253 Ceratophyllum demersum HOM05D007208 ORTHO05D009090 9.7e-20 102.8 80 80.0
Actinidia09879 Actinidia chinensis HOM05D000006 ORTHO05D000001 1.3e-19 102.4 145 44.1
AUR62014989 Chenopodium quinoa HOM05D007208 ORTHO05D009090 4.8e-19 100.5 222 58.1
Dinv03836 Davidia involucrata HOM05D007208 ORTHO05D009090 1.5e-17 95.5 113 49.6
DCAR_021232 Daucus carota HOM05D007208 ORTHO05D009090 3.8e-16 90.9 86 70.9
RcHm_v2.0_Chr2g0162291 Rosa chinensis HOM05D007208 ORTHO05D009090 4.8e-11 73.9 83 47.0
Os07g0491500 Oryza sativa ssp. japonica HOM05D007208 ORTHO05D009090 6.3e-11 73.6 85 62.4
FAN14G2434 Fragaria x ananassa HOM05D007208 ORTHO05D009090 5.3e-10 70.5 77 54.5
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 3.5e-09 67.8 60 55.0
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 1.1e-07 62.8 214 29.0
C07p02640 Brassica napus HOM05D026336 ORTHO05D026439 1.4e-07 62.4 74 41.9
BolC7t40662H Brassica oleracea HOM05D026336 ORTHO05D026439 1.4e-07 62.4 74 41.9
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 2.5e-07 61.6 203 27.6
MD09G1090900 Malus domestica HOM05D007208 ORTHO05D009090 3.2e-07 61.2 43 58.1
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.2e-06 59.3 166 30.1
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.6e-06 58.9 188 29.3
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.6e-06 58.9 152 32.2
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 2.1e-06 58.5 185 29.2
Actinidia11072 Actinidia chinensis HOM05D026336 ORTHO05D026439 3.6e-06 57.8 67 43.3
FvH4_7g09470 Fragaria vesca HOM05D000104 ORTHO05D009920 3.6e-06 57.8 133 31.6
FAN10G2081 Fragaria x ananassa HOM05D000104 ORTHO05D009920 3.6e-06 57.8 133 32.3
Nn4g24095 Nelumbo nucifera HOM05D000424 ORTHO05D000355 4.7e-06 57.4 138 29.0


User provided reference genes

Program Settings