Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 7.3e-104 380.9 252 100.0
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 1.7e-92 343.2 252 89.7
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.5e-91 339.3 252 86.9
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 7.4e-88 327.8 250 87.6
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 5.7e-56 221.9 237 56.5
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 4.2e-51 205.7 237 60.8
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 5.5e-51 205.3 231 59.7
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 4.7e-50 202.2 249 53.4
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 4.7e-50 202.2 255 52.2
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 8.0e-50 201.4 177 66.7
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 8.0e-50 201.4 229 56.8
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 3.0e-49 199.5 231 58.9
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 4.4e-48 195.7 242 55.4
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 5.7e-48 195.3 240 52.5
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 7.5e-48 194.9 240 50.8
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 1.3e-47 194.1 240 51.2
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 2.8e-47 193.0 232 60.3
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 6.3e-47 191.8 242 51.2
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 8.3e-47 191.4 241 50.2
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 8.3e-47 191.4 243 50.6
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.4e-46 190.7 232 55.6
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 4.1e-46 189.1 242 54.1
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 4.1e-46 189.1 253 49.0
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 3.5e-45 186.0 241 49.4
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 3.5e-45 186.0 232 53.9
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.5e-45 185.7 241 49.4
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 7.7e-45 184.9 240 49.6
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.0e-44 184.5 237 50.2
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.0e-44 184.5 251 48.6
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 1.0e-44 184.5 252 53.2
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 1.3e-44 184.1 242 49.6
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.3e-44 184.1 249 51.4
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 6.5e-44 181.8 242 48.3
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 8.5e-44 181.4 232 51.7
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 9.4e-43 177.9 225 53.3
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 9.4e-43 177.9 254 50.4
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 2.1e-42 176.8 248 57.3
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 2.7e-42 176.4 241 51.9
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 3.6e-42 176.0 239 51.9
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 4.7e-42 175.6 165 70.9
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 6.1e-42 175.3 242 53.7
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 8.0e-42 174.9 245 49.4
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 1.0e-41 174.5 240 52.5
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.4e-41 174.1 231 56.3
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 1.4e-41 174.1 242 54.1
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 4.0e-41 172.6 240 47.5
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 5.2e-41 172.2 240 46.7
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 8.8e-41 171.4 249 46.6
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 2.6e-40 169.9 243 44.9
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 2.6e-40 169.9 175 53.7
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 5.7e-40 168.7 246 45.9
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 7.5e-40 168.3 227 49.8
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 7.5e-40 168.3 243 47.3
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 9.8e-40 167.9 250 45.2
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 9.8e-40 167.9 181 59.7
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 2.2e-39 166.8 250 45.6
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 2.8e-39 166.4 238 45.0
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 3.7e-39 166.0 181 60.2
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.8e-39 165.6 253 45.8
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 4.8e-39 165.6 253 45.8
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.4e-38 164.1 257 47.9
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 2.4e-38 163.3 223 45.3
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 2.4e-38 163.3 253 48.6
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 2.4e-38 163.3 251 47.8
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 2.4e-38 163.3 247 50.2
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 3.1e-38 162.9 254 42.9
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 7.0e-38 161.8 253 46.2
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 9.1e-38 161.4 253 52.6
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 9.1e-38 161.4 179 63.7
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 1.2e-37 161.0 239 54.4
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 1.2e-37 161.0 250 49.2
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 1.2e-37 161.0 250 49.2
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 2.0e-37 160.2 266 50.0
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 2.7e-37 159.8 252 52.4
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 2.7e-37 159.8 252 52.4
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 2.7e-37 159.8 260 44.2
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.5e-37 159.5 126 77.8
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 4.5e-37 159.1 180 51.1
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 5.9e-37 158.7 232 46.1
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 1.0e-36 157.9 252 43.3
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 1.7e-36 157.1 237 46.4
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 2.9e-36 156.4 223 44.8
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 3.8e-36 156.0 250 42.4
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.5e-35 154.1 227 49.8
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 2.5e-35 153.3 167 59.9
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 4.2e-35 152.5 234 43.6
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 9.5e-35 151.4 223 51.1
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 1.2e-34 151.0 171 52.0
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 1.6e-34 150.6 246 47.2
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 2.1e-34 150.2 175 57.1
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 4.7e-34 149.1 181 48.1
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 8.0e-34 148.3 243 51.9
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 8.9e-33 144.8 230 42.6
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 2.0e-32 143.7 263 44.5
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 2.8e-31 139.8 231 42.9
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 4.5e-29 132.5 229 39.7
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 5.0e-28 129.0 249 40.6
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.9e-27 127.1 243 38.7
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.2e-26 124.4 171 44.4
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 8.0e-26 121.7 230 41.7
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.4e-25 120.9 229 40.6
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 1.8e-25 120.6 257 36.6
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 3.1e-25 119.8 252 36.1
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 3.4e-24 116.3 203 39.9
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 2.9e-23 113.2 238 36.1
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 9.2e-22 108.2 268 33.6
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 3.3e-19 99.8 193 39.9
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 3.2e-14 83.2 101 54.5
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 3.9e-12 76.3 86 60.5
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 1.5e-11 74.3 62 56.5
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 9.5e-11 71.6 54 63.0
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 1.6e-10 70.9 143 47.6
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 1.6e-10 70.9 143 47.6
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 6.2e-10 68.9 51 62.7
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 1.1e-09 68.2 72 54.2
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 6.8e-09 65.5 97 43.3
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 2.6e-08 63.5 84 47.6
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 4.4e-08 62.8 90 44.4
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 6.4e-07 58.9 56 64.3
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 4.1e-06 56.2 172 37.2
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 5.4e-06 55.8 84 44.0
MCO04G315 Micromonas commoda HOM05D006430 ORTHO05D007585 5.4e-06 55.8 34 76.5


User provided reference genes

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