Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 0.0e+00 1236.5 643 100.0
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 0.0e+00 1207.2 645 97.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 4.3e-265 917.9 633 75.8
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 3.7e-261 904.8 625 75.5
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 2.4e-260 902.1 625 75.5
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 9.2e-260 900.2 615 76.9
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 6.8e-255 884.0 615 75.6
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 2.9e-253 878.6 634 74.0
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 6.0e-251 870.9 625 73.4
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 1.7e-250 869.4 627 73.4
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 9.9e-246 853.6 646 71.1
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 3.0e-242 842.0 666 68.5
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 4.2e-220 768.5 615 68.1
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 3.7e-216 755.4 629 63.3
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.1e-215 753.8 624 62.2
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 1.9e-212 743.0 626 63.3
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.3e-210 736.1 628 59.7
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 6.7e-210 734.6 632 61.2
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 3.3e-209 732.3 629 60.6
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 5.7e-209 731.5 625 61.9
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 5.7e-209 731.5 632 60.8
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 1.4e-207 726.9 628 59.1
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 3.1e-207 725.7 635 60.2
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 6.5e-205 718.0 625 60.6
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 8.4e-205 717.6 630 58.7
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 1.6e-203 713.4 625 59.8
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.7e-203 712.6 623 59.9
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 4.6e-203 711.8 623 59.7
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.6e-203 711.8 623 59.7
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.3e-202 710.3 632 60.0
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.3e-202 709.5 632 60.3
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.9e-201 706.4 637 60.0
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.3e-200 703.7 623 59.1
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 1.9e-196 689.9 627 57.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 7.2e-196 688.0 662 57.6
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.6e-195 686.8 634 56.9
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.3e-192 677.2 590 60.8
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 3.7e-192 675.6 637 56.5
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 3.8e-189 665.6 614 57.8
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 1.4e-188 663.7 620 56.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 7.2e-188 661.4 625 56.5
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 7.2e-188 661.4 626 56.5
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 9.4e-188 661.0 627 56.9
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.7e-187 659.4 622 56.9
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 3.6e-187 659.1 614 57.3
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 1.0e-186 657.5 620 56.6
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 1.8e-186 656.8 618 56.6
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.3e-186 656.4 636 54.9
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 5.1e-186 655.2 618 56.1
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 6.7e-186 654.8 631 57.4
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.5e-185 653.7 627 56.5
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.5e-185 653.7 627 56.5
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 2.6e-185 652.9 623 59.2
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 1.7e-184 650.2 643 53.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 2.2e-184 649.8 555 62.0
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 2.2e-184 649.8 629 57.4
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 3.7e-184 649.0 622 56.3
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.5e-182 643.7 614 56.5
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 5.9e-182 641.7 611 56.5
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.5e-180 637.1 625 53.6
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 2.5e-180 636.3 629 54.4
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 3.2e-180 636.0 629 56.1
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.6e-179 633.6 555 59.8
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.7e-178 628.2 631 53.4
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 2.6e-177 626.3 676 51.9
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 4.4e-177 625.5 631 53.9
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 7.4e-177 624.8 639 53.2
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.8e-176 622.9 638 52.7
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 1.1e-175 620.9 555 59.6
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 1.9e-172 610.1 540 60.2
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.5e-172 608.6 600 54.0
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 3.6e-171 605.9 578 59.7
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.0e-170 604.4 509 62.7
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 2.3e-170 603.2 509 62.5
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 5.2e-170 602.1 520 60.0
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 2.2e-168 596.7 625 53.1
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.7e-168 595.9 610 52.8
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 8.3e-168 594.7 629 53.7
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.4e-167 594.0 523 58.3
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 4.5e-166 589.0 643 50.1
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 5.9e-166 588.6 630 50.0
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 5.9e-166 588.6 618 51.6
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.8e-162 577.0 568 55.6
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 5.0e-157 558.9 698 47.6
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.1e-156 557.8 619 48.0
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 8.0e-155 551.6 512 58.2
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.3e-152 544.3 566 52.5
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 6.4e-152 542.0 622 49.8
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 4.1e-151 539.3 623 49.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 7.8e-150 535.0 605 52.2
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.7e-149 533.9 622 47.1
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.1e-148 531.2 619 49.1
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 7.5e-145 518.5 450 62.0
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 2.0e-142 510.4 462 59.1
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.0e-142 510.4 554 50.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.0e-141 508.1 467 58.0
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 6.6e-133 478.8 663 43.6
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.6e-125 451.8 381 59.3
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.4e-114 417.2 385 63.9
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 3.8e-112 409.8 474 47.9
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.1e-103 381.7 389 54.2
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.4e-82 311.6 637 32.0
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.8e-82 311.2 630 32.2
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.9e-79 301.2 628 35.5
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 8.2e-75 285.8 508 39.0
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 8.2e-75 285.8 508 39.0
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 6.1e-70 269.6 367 45.0
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 7.9e-70 269.2 365 44.1
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 7.4e-68 262.7 621 29.8
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 6.3e-67 259.6 507 32.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.7e-54 217.6 262 45.0
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.2e-52 212.2 257 45.9
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 9.8e-52 209.1 257 45.5
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.5e-44 185.3 176 54.5
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 3.4e-36 157.5 420 28.3
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 9.2e-34 149.4 161 49.1
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 5.9e-33 146.7 132 56.8
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 3.0e-32 144.4 144 55.6
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.5e-31 142.1 158 50.0
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.3e-31 140.6 404 30.9
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 3.6e-30 137.5 158 48.7
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.4e-28 130.6 378 33.1
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 7.5e-28 129.8 166 38.0
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 1.7e-27 128.6 222 39.2
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.9e-27 127.9 142 48.6
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 4.1e-26 124.0 151 41.7
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.4e-26 123.6 329 29.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 3.9e-24 117.5 133 49.6
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 6.2e-22 110.2 403 28.3
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.7e-16 92.0 135 39.3
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 8.6e-16 89.7 84 54.8
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.5e-15 89.0 116 39.7
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.5e-15 88.2 59 71.2
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 8.1e-14 83.2 88 48.9
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 5.2e-13 80.5 80 53.8
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 5.2e-13 80.5 73 60.3
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.3e-11 75.9 69 49.3
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 6.4e-11 73.6 110 36.4
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 9.2e-10 69.7 41 75.6
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.2e-09 69.3 74 50.0
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 7.3e-07 60.1 73 43.8
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 4.7e-06 57.4 152 30.3


User provided reference genes

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